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Report for Sequence Feature Glyma04g23080

Feature Type:gene_model
Chromosome:Gm04
Start:26333265
stop:26343453
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g23080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G26170AT Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr1:9047539-9054438 REVERSE LENGTH=1022 SoyBaseE_val: 4.00E-90ISS
GO:0000059GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus, docking SoyBaseN/AISS
GO:0000226GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization SoyBaseN/AISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005643GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear pore SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0008565GO-mf Annotation by Michelle Graham. GO Molecular Function: protein transporter activity SoyBaseN/AISS
PTHR10997Panther IMPORTIN (RAN-BINDING PROTEIN) JGI ISS
PTHR10997:SF9Panther IMPORTIN-ALPHA RE-EXPORTER RELATED JGI ISS
UniRef100_B9RLA7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Importin, putative n=1 Tax=Ricinus communis RepID=B9RLA7_RICCO SoyBaseE_val: 3.00E-93ISS
UniRef100_I1JWB0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JWB0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g23080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g23080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g153200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g23080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g23080
>Glyma04g23080.1   sequence type=CDS   gene model=Glyma04g23080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATTCGACAAATGAAAATCAGGATGGAGAGTTTACTACATTATGGAAGTTAAAAATCCCAAATGCATGTCACCCATTTTTTAGCTGTGTTAGAATCATGTCGCTGAGGTGGGAATCGATGTCTTGCTTCAATCATGCTCTGTTAATCTCTGACATGAAGTGCATGCCATTGATTCTGGAAAAATTTATGCATCGATTATTCTGTGAGATTTTGTTTTCATTTTCTCCCGTTTCATTTCTAAGTTTCGAGCATGTTAATTTTTGGCAAATAAGAGAAGCTACTCTTTTTGCCTTATCGTCTCTTTCAGAAGAACTGTTGGAGACAGAAAAACCGAATTTGATACGAGTAGCTCTCGCGATGCCTCTTCTTTGCAATGGTTTACTAGAACACTTTCTCTATTTTGCAATGAAAGCAATTAAAATGGATCCCCCACCTGTAAAAGTAGGTGTCTGCAGAGAACTTACTAACCTTCTTCCTGAAACAAAAAAAGAAATTGTCCAATCACAATTGTTGGGTTTAATTTCATCCCTCACAGATCTTCTTAATCATATGAAACCTTGCTCATGGTACTTGATACATTGCTTGCTGCAATTGGGGTTATGGGGTTATTTTGAGATTAGTGCCTACATAAAATGCAGATTGTTCTTGTTGGCAATCCCATTTCATGCAAGAGTAAAAAGTAGAATGTTGTTGCAAGGTTTATTGCAGAGTCATGAGTCATCAACATTAGTTGAACACATGATTTCTCCCGTAATCCTTAATGTGTGGGCATCACATGTTTCGGATCCTTTTATCAGTATTGATGCACTGGAAGCTATCAAAAGCATTGTCGGATGTGTACATCCATTGGTTTCTAGAATTTTGCCATATATTGGAACAATTTTGAATAAACCCCAAGAGCAGGCTGATGGTTTGGTAACTGGATCATTAGATTTGAATGCCCCTGATGATGTAGTGAAAGCAATATATGATGTCTCTTTTAATGCTGTTATCAACATAATCCTTCAAAGTGATGACCACAGTGAAATTCAGCTTGAGCGAAAGCTTTTTGTCACAAATAACACTCAAGGCACTTTTTGGTTTCAATTACCCAACTTGAATTCTATGATTTACATCATCTCTTATTTTTGTGCACTGCTAGACCCCAAATTGGAAAGCTCTGGGTCTCTCTTTGTTGGAAGTTGCATTCTTCAACTGATTTTGCATTTACCATCACAGATAGTGGTACATATACGAGACCTAATTGCTGCTCTTGTCAAACACATGCAATCTGCTCAAAACTTTGTCTTGCTAAGCTCATTGCTAATTTTTATTGATTTATTGATCTCAATTCTTGCGGAAAGACATGGTAATTCCTTTTCTTATATAATGTCAGAATGGACTAAGCAGCAAGGTGACATCCTTCTACTATTATATTTGTTAAGGTATCTTATTATCCTCATGAATGAATGGTTTAAAAAATCATTAATTAGTTTTGACTCAACTGTTAAGGATCAAATCCAAATACCAAATAGTGTTTAA
Predicted protein sequences of Glyma04g23080
>Glyma04g23080.1   sequence type=predicted peptide   gene model=Glyma04g23080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
DSTNENQDGEFTTLWKLKIPNACHPFFSCVRIMSLRWESMSCFNHALLISDMKCMPLILEKFMHRLFCEILFSFSPVSFLSFEHVNFWQIREATLFALSSLSEELLETEKPNLIRVALAMPLLCNGLLEHFLYFAMKAIKMDPPPVKVGVCRELTNLLPETKKEIVQSQLLGLISSLTDLLNHMKPCSWYLIHCLLQLGLWGYFEISAYIKCRLFLLAIPFHARVKSRMLLQGLLQSHESSTLVEHMISPVILNVWASHVSDPFISIDALEAIKSIVGCVHPLVSRILPYIGTILNKPQEQADGLVTGSLDLNAPDDVVKAIYDVSFNAVINIILQSDDHSEIQLERKLFVTNNTQGTFWFQLPNLNSMIYIISYFCALLDPKLESSGSLFVGSCILQLILHLPSQIVVHIRDLIAALVKHMQSAQNFVLLSSLLIFIDLLISILAERHGNSFSYIMSEWTKQQGDILLLLYLLRYLIILMNEWFKKSLISFDSTVKDQIQIPNSV*






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