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Report for Sequence Feature Glyma04g22407

Feature Type:gene_model
Chromosome:Gm04
Start:25728160
stop:25732719
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g22407
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18550AT Annotation by Michelle Graham. TAIR10: TCP family transcription factor | chr3:6383769-6385604 FORWARD LENGTH=429 SoyBaseE_val: 4.00E-30ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:2000032GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of secondary shoot formation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF03634PFAM TCP family transcription factor JGI ISS
UniRef100_I1JWA4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JWA4_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q1WK55UniRef Annotation by Michelle Graham. Most informative UniRef hit: CYC5 n=1 Tax=Lotus japonicus RepID=Q1WK55_LOTJA SoyBaseE_val: 3.00E-73ISS

Expression Patterns of Glyma04g22407
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g22407 not represented in the dataset
Glyma04g22407 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g22407 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g152400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g22407
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g22407
>Glyma04g22407.2   sequence type=transcript   gene model=Glyma04g22407   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACACATGTTGCATCATTAGTTAAACCCTGTCTACCTCAATCACTCTCTACTAAACACAAAGTATATCTCAAATTAATTGTTGGATTTTGTTTGCAGGGAGAAAGAAAGAAAGTAAAATCTAAAACGCAATGAAAAGGCTGAAATAGATCGATGATATATGCTGTTGTTCAATAGTAGAGGGAGGGTGAATAAGTGAAGTACTACACATCGTTCTCAATCTTTTTCTTAATAGTCCTATAATATCTATAACTCTGCACCTCCAACGAGGGTAGTAGTAAAGTAGGGTTATATTTGGTGCAATAATATGCAATCTCAAAGTTCAGATACGTTTCCCTCTCACAATGGCAATGACCCAATTTCCTGTTATGACCCAGCATTTTACTACTACAATAGCAGGCCCTTTTCTCCCATTGACTCTGAAAGCAACCCAACATCAAAACAAGACAACAACAACAACTGTGACCTCGTTCCTTCTCCTACTCCTTTGTCCTTTTTCCACTTTCCTTCTTCTCCCTTTGAAGACACTCAAAATCAAATTTTGCTCGAACAACACCACGATTTTCTCCTTCAGTTTCACCATCAATCTCTCCCCAAAGACCCCGTGCCTCAACCGGCAGTTATCACCACCATGGATCCTTTTGTTAAAAAGAGTGACCAGATCCAAAGAAAAAGACCTGGCAAGAGAGACAGGCACAGCAAGATCAACACCGCAAGAGGGTTGAGGGATCGGAGAATGAGACTTTCCCTTGAAGTTGCAAAGAGGTTTTTCGGCCTTCAAGATATGCTGAACTTTGACAAAGCAAGCAAGACCGTGGAGTGGTTATTGAACCAAGCAAAAGTAGAAATCAACCGTTTAGTGAAAGAGAAGAAGAAGAATGATCATCATCATCAAAGTTGTAGCAGTGCTAGTTCGGAATGTGAAGAAGGTGTGTCTAGTCTTGATGAGGTTGTAGTAAGTCGAGATCAAGAACAACAACAACAACAACAACAAGAGAAGGTGGAAAAAGTTGTAAAGAGAAGGGTCAAAAACTCTAGAAAGATCAGTGCATTTGACCCTCTTGCAAAAGAGTGTAGGGAAAGGGCAAGGGAAAGAGCAAGAGAGAGGACAAGAGAAAAGATGAGAAGCCGTGGAGTTCTAGCTGAAGAATCAAAGCAATGTGGAGAGGAAACAAATCAGGATCTGATCCAATTGGGTTCTTCGAACCCCTTTGAAACCGGAGATCAAGAATCTGGTGCCAAGACAAGTCACAGTGTTGATGTGCATCCTTCTTCCTTGGACGTGATTGCTACTGAGGCTAAAGAACAAAGCTACCGTGCAGTAAAGGAGCATAATGATGATGATGATGATTCTTTGGTTGTTTTGAGCAAATGGAGCCCCTCCTTGATTTTCAATAACTCTGGATTCTCTCAAGATCACCAATTTGCAGAATTTCAGTCCTTAGGAAAGCCGTGGGAGACCTAAAACAATCACATCTTTGATGTGACAACAGAAATGCGCGAGCCTGATATGTATTTGTTTACTTTCCTTTCAGAAATTTAACGGAGTAAGGTACTTTCCACTTCTACGAATCTGGTAAAAAATCAATATATAAAACGGTTCTATTTTCATCTCTATACCACGTTTCCTTTTCCATGTTTCTGCTCTGATCCTGGCTACGTACTTACTACTCAGTGACATGGTACAAATTCAATAGTATCTATAACGGCCTTATTCATGCTTTTAATTAAGAAAAATAACTAATTACATTTTTTTTTATCTCAACCTGGGTTAATGCATTCATTATACCACTTGGAAC
Coding sequences of Glyma04g22407
>Glyma04g22407.1   sequence type=CDS   gene model=Glyma04g22407   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATCTCAAAGTTCAGATACGTTTCCCTCTCACAATGGCAATGACCCAATTTCCTGTTATGACCCAGCATTTTACTACTACAATAGCAGGCCCTTTTCTCCCATTGACTCTGAAAGCAACCCAACATCAAAACAAGACAACAACAACAACTGTGACCTCGTTCCTTCTCCTACTCCTTTGTCCTTTTTCCACTTTCCTTCTTCTCCCTTTGAAGACACTCAAAATCAAATTTTGCTCGAACAACACCACGATTTTCTCCTTCAGTTTCACCATCAATCTCTCCCCAAAGACCCCGTGCCTCAACCGGCAGTTATCACCACCATGGATCCTTTTGTTAAAAAGAGTGACCAGATCCAAAGAAAAAGACCTGGCAAGAGAGACAGGCACAGCAAGATCAACACCGCAAGAGGGTTGAGGGATCGGAGAATGAGACTTTCCCTTGAAGTTGCAAAGAGGTTTTTCGGCCTTCAAGATATGCTGAACTTTGACAAAGCAAGCAAGACCGTGGAGTGGTTATTGAACCAAGCAAAAGTAGAAATCAACCGTTTAGTGAAAGAGAAGAAGAAGAATGATCATCATCATCAAAGTTGTAGCAGTGCTAGTTCGGAATGTGAAGAAGGTGTGTCTAGTCTTGATGAGGTTGTAGTAAGTCGAGATCAAGAACAACAACAACAACAACAACAAGAGAAGGTGGAAAAAGTTGTAAAGAGAAGGGTCAAAAACTCTAGAAAGATCAGTGCATTTGACCCTCTTGCAAAAGAGTGTAGGGAAAGGGCAAGGGAAAGAGCAAGAGAGAGGACAAGAGAAAAGATGAGAAGCCGTGGAGTTCTAGCTGAAGAATCAAAGCAATGTGGAGAGGAAACAAATCAGGATCTGATCCAATTGGGTTCTTCGAACCCCTTTGAAACCGGAGATCAAGAATCTGGTGCCAAGACAAGTCACAGTGTTGATGTGCATCCTTCTTCCTTGGACGTGATTGCTACTGAGGCTAAAGAACAAAGCTACCGTGCAGTAAAGGAGCATAATGATGATGATGATGATTCTTTGGTTGTTTTGAGCAAATGGAGCCCCTCCTTGATTTTCAATAACTCTGGATTCTCTCAAGATCACCAATTTGCAGAATTTCAGTCCTTAGGAAAGCCGTGGGAGACCTAA

>Glyma04g22407.2   sequence type=CDS   gene model=Glyma04g22407   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATCTCAAAGTTCAGATACGTTTCCCTCTCACAATGGCAATGACCCAATTTCCTGTTATGACCCAGCATTTTACTACTACAATAGCAGGCCCTTTTCTCCCATTGACTCTGAAAGCAACCCAACATCAAAACAAGACAACAACAACAACTGTGACCTCGTTCCTTCTCCTACTCCTTTGTCCTTTTTCCACTTTCCTTCTTCTCCCTTTGAAGACACTCAAAATCAAATTTTGCTCGAACAACACCACGATTTTCTCCTTCAGTTTCACCATCAATCTCTCCCCAAAGACCCCGTGCCTCAACCGGCAGTTATCACCACCATGGATCCTTTTGTTAAAAAGAGTGACCAGATCCAAAGAAAAAGACCTGGCAAGAGAGACAGGCACAGCAAGATCAACACCGCAAGAGGGTTGAGGGATCGGAGAATGAGACTTTCCCTTGAAGTTGCAAAGAGGTTTTTCGGCCTTCAAGATATGCTGAACTTTGACAAAGCAAGCAAGACCGTGGAGTGGTTATTGAACCAAGCAAAAGTAGAAATCAACCGTTTAGTGAAAGAGAAGAAGAAGAATGATCATCATCATCAAAGTTGTAGCAGTGCTAGTTCGGAATGTGAAGAAGGTGTGTCTAGTCTTGATGAGGTTGTAGTAAGTCGAGATCAAGAACAACAACAACAACAACAACAAGAGAAGGTGGAAAAAGTTGTAAAGAGAAGGGTCAAAAACTCTAGAAAGATCAGTGCATTTGACCCTCTTGCAAAAGAGTGTAGGGAAAGGGCAAGGGAAAGAGCAAGAGAGAGGACAAGAGAAAAGATGAGAAGCCGTGGAGTTCTAGCTGAAGAATCAAAGCAATGTGGAGAGGAAACAAATCAGGATCTGATCCAATTGGGTTCTTCGAACCCCTTTGAAACCGGAGATCAAGAATCTGGTGCCAAGACAAGTCACAGTGTTGATGTGCATCCTTCTTCCTTGGACGTGATTGCTACTGAGGCTAAAGAACAAAGCTACCGTGCAGTAAAGGAGCATAATGATGATGATGATGATTCTTTGGTTGTTTTGAGCAAATGGAGCCCCTCCTTGATTTTCAATAACTCTGGATTCTCTCAAGATCACCAATTTGCAGAATTTCAGTCCTTAGGAAAGCCGTGGGAGACCTAA
Predicted protein sequences of Glyma04g22407
>Glyma04g22407.1   sequence type=predicted peptide   gene model=Glyma04g22407   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSQSSDTFPSHNGNDPISCYDPAFYYYNSRPFSPIDSESNPTSKQDNNNNCDLVPSPTPLSFFHFPSSPFEDTQNQILLEQHHDFLLQFHHQSLPKDPVPQPAVITTMDPFVKKSDQIQRKRPGKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLNFDKASKTVEWLLNQAKVEINRLVKEKKKNDHHHQSCSSASSECEEGVSSLDEVVVSRDQEQQQQQQQEKVEKVVKRRVKNSRKISAFDPLAKECRERARERARERTREKMRSRGVLAEESKQCGEETNQDLIQLGSSNPFETGDQESGAKTSHSVDVHPSSLDVIATEAKEQSYRAVKEHNDDDDDSLVVLSKWSPSLIFNNSGFSQDHQFAEFQSLGKPWET*

>Glyma04g22407.2   sequence type=predicted peptide   gene model=Glyma04g22407   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSQSSDTFPSHNGNDPISCYDPAFYYYNSRPFSPIDSESNPTSKQDNNNNCDLVPSPTPLSFFHFPSSPFEDTQNQILLEQHHDFLLQFHHQSLPKDPVPQPAVITTMDPFVKKSDQIQRKRPGKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLNFDKASKTVEWLLNQAKVEINRLVKEKKKNDHHHQSCSSASSECEEGVSSLDEVVVSRDQEQQQQQQQEKVEKVVKRRVKNSRKISAFDPLAKECRERARERARERTREKMRSRGVLAEESKQCGEETNQDLIQLGSSNPFETGDQESGAKTSHSVDVHPSSLDVIATEAKEQSYRAVKEHNDDDDDSLVVLSKWSPSLIFNNSGFSQDHQFAEFQSLGKPWET*






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