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Report for Sequence Feature Glyma04g22164

Feature Type:gene_model
Chromosome:Gm04
Start:25382690
stop:25383393
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g22164
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G45650AT Annotation by Michelle Graham. TAIR10: AGAMOUS-like 6 | chr2:18804453-18806291 FORWARD LENGTH=252 SoyBaseE_val: 3.00E-19ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009911GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0048437GO-bp Annotation by Michelle Graham. GO Biological Process: floral organ development SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR11945Panther MADS BOX PROTEIN JGI ISS
PTHR11945:SF19Panther MADS BOX PROTEIN JGI ISS
PF01486PFAM K-box region JGI ISS
UniRef100_Q8LLR1UniRef Annotation by Michelle Graham. Most informative UniRef hit: MADS-box protein 3 n=1 Tax=Vitis vinifera RepID=Q8LLR1_VITVI SoyBaseE_val: 1.00E-38ISS
UniRef100_UPI00023393B2UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023393B2 related cluster n=1 Tax=unknown RepID=UPI00023393B2 SoyBaseE_val: 2.00E-50ISS

Expression Patterns of Glyma04g22164
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g22164 not represented in the dataset
Glyma04g22164 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g22164 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma04g22164
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g22164
>Glyma04g22164.1   sequence type=CDS   gene model=Glyma04g22164   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTACCAAAACTATTGAGCGATACTATCGTAGCTCTTTTACTCCTCAAGACGAACACGTTGAATGTGAAACTCAGAGCTGGTACCAAGAGGTGTCAAAGCTAAAGGCAAAGTATGATTCTCTTCAAAGGACCCAGAGGCATTTTCTTGGGGAAGATCTTGGACCATTGAACACAAAGGAGCTGCAGAATCTTGAGAAACAACTTGAAGGGTCTTTAGCACAACCAAGGCAAAGGAAGGTGCGAACACATATATGTAGAATTTCTCTTTATTGCTCTATGGATTCTTGA
Predicted protein sequences of Glyma04g22164
>Glyma04g22164.1   sequence type=predicted peptide   gene model=Glyma04g22164   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTKTIERYYRSSFTPQDEHVECETQSWYQEVSKLKAKYDSLQRTQRHFLGEDLGPLNTKELQNLEKQLEGSLAQPRQRKVRTHICRISLYCSMDS*






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