Glyma04g22130 - SoyBase

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Report for Sequence Feature Glyma04g22130

Feature Type:	gene_model
Chromosome:	Gm04
Start:	25355602
stop:	25356984
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g22130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03390	AT	Annotation by Michelle Graham. TAIR10: HXXXD-type acyl-transferase family protein \| chr1:841033-842418 REVERSE LENGTH=461	SoyBase	E_val: 0	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0016747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups	SoyBase	N/A	ISS
PF02458	PFAM	Transferase family	JGI		ISS
UniRef100_B9RPA0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Taxadien-5-alpha-ol O-acetyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RPA0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JWA0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JWA0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g22130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g22130

Paralog	Evidence	Comments
Glyma06g23530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g22130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g151700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g22130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g22130

Limit To All Plant Sequences

>Glyma04g22130.1   sequence type=CDS   gene model=Glyma04g22130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCTCCATGGGTTCAAGAGCTCAATCTCATTCACCTGAGCATTCCTATAACCATTGATAAAATGTTTTCGGTCATGCCGTCAAGGCCTATTCCTGTTAAACCAGGTGACAGTTTATACCTTTCCAACCTCGATGACATGATCGGAGCTCGTGTTTTTACGCCTACGGTGTACTTCTATCAATCCGATGACACATGCTTCTCAGAAAAACCTGTCACCAAAACACTGCAGTGTGCTCTCGCTGATGTTCTGGTGCCTTATTACCCTCTCTCAGGCAGGCTCAGAAAGACCAAGAATGGTAAACTGGAAGTGTTTTTCGGACCAGATCAAGGAGCACTCATCGTCGAGGCGCGGTCTGATATCGCCTTGGCCGAATTAGGAGACCTCACAGCTCCAAACCCGGATTGGGAGCCTTTGATCTTCAAGTTTCCCGATGAAGAACAATACAAAGTCCTCGAAATGCCACTGGTCATTGCTCAGGTTACCCTTTTCCGCTGCGGTGGCTTTAGCCTCGGTTTGAGGCTGTGCCATTGCATCTGTGATGGCATGGGAGCTATGCAGTTCCTAGGTGCGTGGGCTGCCACAGCAAGAACAGGAACACTAGTAACAGATCCTGAGCCCTGTTGGGATAGGGAAATTTTTAGGCCTCGTGACCCTCCTGAGGTGAAATTTCCCCACATGGAGTTTATGACAATTGAAGAGGGATCCAACCTGACAATGACACTATGGGAAACCAAGCCTGTTCAGAAGTGTTACAGGATCAAGCGTGAGTTCCAGAACCACGTAAAATCTCTTGCTCAGCCATATGATGCTGCAGGCTGCACCACTTTTGATGCTATGGCAGCACATATTTGGAGATCTTGGGTGAAAGCTCTTGATGTAAGACCACTAGATTACCAACTTAGGCTAACATTTTCGGTCAATGCTCGGCAGAAGCTTCGGAATCCTCCACTGAGAGAAGGGTTTTATGGCAATGTGGTGTGTGTTGCTTGCACAACAAGCACTGTCTCAGAGCTTGTTCATGGAAAGCTCCCAGAGACTACCCTTTTGGTGCGCGAGGCGAGACAGAGTGTCTCGGAGGAGTATTTGAGATCCACAGTGGATTTGGTTGAAGTGGATAGGCCAAGGCAGCTTGAGTTTGGTGGGAAACTAACCATAACTCAATGGACTAGGTTCTCAATTTATAAGTGTGCAGATTTTGGGTGGGGTAGACCACTTTATGCTGGTCCTATAGATTTAACACCAACACCTCAGGTTTGTGTGTTTCTACCAGAAGGGGAAGCTGATTGTAGTGGTGGTTCTATGATTGTGTGCATATGCTTGCCTGAGTCTGCTGCAGAGAAGTTCACACAAGACTTGTTGCTCAATTCGGTTTTTTGA

Predicted protein sequences of Glyma04g22130

Limit To All Plant Sequences

>Glyma04g22130.1   sequence type=predicted peptide   gene model=Glyma04g22130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPPWVQELNLIHLSIPITIDKMFSVMPSRPIPVKPGDSLYLSNLDDMIGARVFTPTVYFYQSDDTCFSEKPVTKTLQCALADVLVPYYPLSGRLRKTKNGKLEVFFGPDQGALIVEARSDIALAELGDLTAPNPDWEPLIFKFPDEEQYKVLEMPLVIAQVTLFRCGGFSLGLRLCHCICDGMGAMQFLGAWAATARTGTLVTDPEPCWDREIFRPRDPPEVKFPHMEFMTIEEGSNLTMTLWETKPVQKCYRIKREFQNHVKSLAQPYDAAGCTTFDAMAAHIWRSWVKALDVRPLDYQLRLTFSVNARQKLRNPPLREGFYGNVVCVACTTSTVSELVHGKLPETTLLVREARQSVSEEYLRSTVDLVEVDRPRQLEFGGKLTITQWTRFSIYKCADFGWGRPLYAGPIDLTPTPQVCVFLPEGEADCSGGSMIVCICLPESAAEKFTQDLLLNSVF*

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