Glyma04g21826 - SoyBase

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Report for Sequence Feature Glyma04g21826

Feature Type:	gene_model
Chromosome:	Gm04
Start:	25183075
stop:	25184905
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g21826

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19950	AT	Annotation by Michelle Graham. TAIR10: Domain of unknown function (DUF1767) \| chr5:6741163-6743702 REVERSE LENGTH=441	SoyBase	E_val: 4.00E-30	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR13681	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13681:SF2	Panther	gb def: Hypothetical protein At5g19950	JGI		ISS
UniRef100_Q8L502	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5G19950 protein n=1 Tax=Arabidopsis thaliana RepID=Q8L502_ARATH	SoyBase	E_val: 2.00E-27	ISS
UniRef100_UPI00023398BF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023398BF related cluster n=1 Tax=unknown RepID=UPI00023398BF	SoyBase	E_val: 1.00E-99	ISS

Expression Patterns of Glyma04g21826

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g21826 not represented in the dataset	Glyma04g21826 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g21826

Paralog	Evidence	Comments
Glyma06g23580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g21826 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g151400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g21826

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g21826

Limit To All Plant Sequences

>Glyma04g21826.2   sequence type=transcript   gene model=Glyma04g21826   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGATGAGAATTCGCGTGGTTGGGACTCAGGAGGAGGAATGGTGTTAGAAACCCTAAGAAAACGAGGTTGGTGTTTGGAAGACACGGATGGTCACTACGAAATAACTACTGTTGAATATTCTCACATTCCTTCTATACCCAATAATGTGGTTCTGGGTACTAAGATTCATTTGGAAAATAAAGTTGCGGTTCACAGTGGTATTGTTTGCTTAAATCCTAAAGTATTGACTGTATTAGGAGGTGTTGTTCAATCGCTCTATGAAGAATGGGAGATGAACCAAAAATATTCAGGATTCTCCCGATCATCTTTAAGAAAGCTAGAGAATCGTGATACAGGTGGTCCTCCACAGTTTGTGAAGCTGCAGGTTGGATCTTCTTCAGATTATAACTCTAGTAGAAGCTGTAAGCCAATTGGTGTGGTTGGTGAAGCTGAGTTGAGACCAACAAGTACTGCAGATTATAACTCTAGTAAAAGTTGTAAGCCAATTGCTGTGGTTGGTGAAGCTGGGTTGAGACCAACTGATTTCCATAAAGACCCTAATCAGAAAGCAATGCAAATGTACAATCCAAACCACCTCAAGAAAGAGCTGAAGACAAGACTGAAGACAAAAAATTAA

>Glyma04g21826.3   sequence type=transcript   gene model=Glyma04g21826   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGATGAGAATTCGCGTGGTTGGGACTCAGGAGGAGGAATGGTGTTAGAAACCCTAAGAAAACGAGGTTGGTGTTTGGAAGACACGGATGGTCACTACGAAATAACTACTGTTGAATATTCTCACATTCCTTCTATACCCAATAATGTGGTTCTGGGTACTAAGATTCATTTGGAAAATAAAGTTGCGGTTCACAGTGGTATTGTTTGCTTAAATCCTAAAGTATTGACTGTATTAGGAGGTGTTGTTCAATCGCTCTATGAAGAATGGGAGATGAACCAAAAATATTCAGGATTCTCCCGATCATCTTTAAGAAAGCTAGAGAATCGTGATACAGGTGGTCCTCCACAGTTTGTGAAGCTGCAGGTTGGATCTTCTTCAGATTATAACTCTAGTAAAAGTTGTAAGCCAATTGCTGTGGTTGGTGAAGCTGGGTTGAGACCAACTGATTTCCATAAAGACCCTAATCAGAAAGCAATGCAAATGTACAATCCAAACCACCTCAAGAAAGAGCTGAAGACAAGACTGAAGACAAAAAATTAA

Coding sequences of Glyma04g21826

Limit To All Plant Sequences

>Glyma04g21826.1   sequence type=CDS   gene model=Glyma04g21826   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGATGAGAATTCGCGTGGTTGGGACTCAGGAGGAGGAATGGTGTTAGAAACCCTAAGAAAACGAGGTTGGTGTTTGGAAGACACGGATGGTCACTACGAAATAACTACTGTTGAATATTCTCACATTCCTTCTATACCCAATAATGTGGTTCTGGGTACTAAGATTCATTTGGAAAATAAAGTTGCGGTTCACAGTGGTATTGTTTGCTTAAATCCTAAAGTATTGACTGTATTAGGAGGTGTTGTTCAATCGCTCTATGAAGAATGGGAGATGAACCAAAAATATTCAGGATTCTCCCGATCATCTTTAAGAAAGCTAGAGAATCGTGATACAGGTGGTCCTCCACAGTTTGTGAAGCTGCAGGTTGGATCTTCTTCAGGTATTGCAGATTATAACTCTAGTAGAAGCTGTAAGCCAATTGGTGTGGTTGGTGAAGCTGAGTTGAGACCAACAAGTACTGCAGATTATAACTCTAGTAAAAGTTGTAAGCCAATTGCTGTGGTTGGTGAAGCTGGGTTGAGACCAACTGATTTCCATAAAGACCCTAATCAGAAAGCAATGCAAATGTACAATCCAAACCACCTCAAGAAAGAGCTGAAGACAAGACTGAAGACAAAAAATTAA

>Glyma04g21826.2   sequence type=CDS   gene model=Glyma04g21826   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGATGAGAATTCGCGTGGTTGGGACTCAGGAGGAGGAATGGTGTTAGAAACCCTAAGAAAACGAGGTTGGTGTTTGGAAGACACGGATGGTCACTACGAAATAACTACTGTTGAATATTCTCACATTCCTTCTATACCCAATAATGTGGTTCTGGGTACTAAGATTCATTTGGAAAATAAAGTTGCGGTTCACAGTGGTATTGTTTGCTTAAATCCTAAAGTATTGACTGTATTAGGAGGTGTTGTTCAATCGCTCTATGAAGAATGGGAGATGAACCAAAAATATTCAGGATTCTCCCGATCATCTTTAAGAAAGCTAGAGAATCGTGATACAGGTGGTCCTCCACAGTTTGTGAAGCTGCAGGTTGGATCTTCTTCAGATTATAACTCTAGTAGAAGCTGTAAGCCAATTGGTGTGGTTGGTGAAGCTGAGTTGAGACCAACAAGTACTGCAGATTATAACTCTAGTAAAAGTTGTAAGCCAATTGCTGTGGTTGGTGAAGCTGGGTTGAGACCAACTGATTTCCATAAAGACCCTAATCAGAAAGCAATGCAAATGTACAATCCAAACCACCTCAAGAAAGAGCTGAAGACAAGACTGAAGACAAAAAATTAA

>Glyma04g21826.3   sequence type=CDS   gene model=Glyma04g21826   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGATGAGAATTCGCGTGGTTGGGACTCAGGAGGAGGAATGGTGTTAGAAACCCTAAGAAAACGAGGTTGGTGTTTGGAAGACACGGATGGTCACTACGAAATAACTACTGTTGAATATTCTCACATTCCTTCTATACCCAATAATGTGGTTCTGGGTACTAAGATTCATTTGGAAAATAAAGTTGCGGTTCACAGTGGTATTGTTTGCTTAAATCCTAAAGTATTGACTGTATTAGGAGGTGTTGTTCAATCGCTCTATGAAGAATGGGAGATGAACCAAAAATATTCAGGATTCTCCCGATCATCTTTAAGAAAGCTAGAGAATCGTGATACAGGTGGTCCTCCACAGTTTGTGAAGCTGCAGGTTGGATCTTCTTCAGATTATAACTCTAGTAAAAGTTGTAAGCCAATTGCTGTGGTTGGTGAAGCTGGGTTGAGACCAACTGATTTCCATAAAGACCCTAATCAGAAAGCAATGCAAATGTACAATCCAAACCACCTCAAGAAAGAGCTGAAGACAAGACTGAAGACAAAAAATTAA

Predicted protein sequences of Glyma04g21826

Limit To All Plant Sequences

>Glyma04g21826.1   sequence type=predicted peptide   gene model=Glyma04g21826   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMDENSRGWDSGGGMVLETLRKRGWCLEDTDGHYEITTVEYSHIPSIPNNVVLGTKIHLENKVAVHSGIVCLNPKVLTVLGGVVQSLYEEWEMNQKYSGFSRSSLRKLENRDTGGPPQFVKLQVGSSSGIADYNSSRSCKPIGVVGEAELRPTSTADYNSSKSCKPIAVVGEAGLRPTDFHKDPNQKAMQMYNPNHLKKELKTRLKTKN*

>Glyma04g21826.2   sequence type=predicted peptide   gene model=Glyma04g21826   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMDENSRGWDSGGGMVLETLRKRGWCLEDTDGHYEITTVEYSHIPSIPNNVVLGTKIHLENKVAVHSGIVCLNPKVLTVLGGVVQSLYEEWEMNQKYSGFSRSSLRKLENRDTGGPPQFVKLQVGSSSDYNSSRSCKPIGVVGEAELRPTSTADYNSSKSCKPIAVVGEAGLRPTDFHKDPNQKAMQMYNPNHLKKELKTRLKTKN*

>Glyma04g21826.3   sequence type=predicted peptide   gene model=Glyma04g21826   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMDENSRGWDSGGGMVLETLRKRGWCLEDTDGHYEITTVEYSHIPSIPNNVVLGTKIHLENKVAVHSGIVCLNPKVLTVLGGVVQSLYEEWEMNQKYSGFSRSSLRKLENRDTGGPPQFVKLQVGSSSDYNSSKSCKPIAVVGEAGLRPTDFHKDPNQKAMQMYNPNHLKKELKTRLKTKN*

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