Glyma04g21680 - SoyBase

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Report for Sequence Feature Glyma04g21680

Feature Type:	gene_model
Chromosome:	Gm04
Start:	24885968
stop:	24889111
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g21680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G03500	AT	Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein \| chr2:1059926-1062259 FORWARD LENGTH=432	SoyBase	E_val: 3.00E-122	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_G7JU63	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Two-component response regulator ARR14 n=1 Tax=Medicago truncatula RepID=G7JU63_MEDTR	SoyBase	E_val: 1.00E-169	ISS
UniRef100_UPI00023393AD	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023393AD related cluster n=1 Tax=unknown RepID=UPI00023393AD	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g21680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g21680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g151000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g21680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g21680

Limit To All Plant Sequences

>Glyma04g21680.1   sequence type=CDS   gene model=Glyma04g21680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCACAAGTAGAGCTAAGCATGGATTACAAGCCCTACAGCTACTCCACACTGCTGAAATCATATGCAGATGAAACTGAAACTGATCAGACCCACAAGCTCGAAGAGTTCCTCTCTCGCTTAGAGGAAGAGCGTGTCAAGATTGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTCCTAACCAACGCCGTGGAGGCTTCAAGACAGCAACTACAAGCCTTCAGATCGAACCAAGGAACAAGGCCAGTTCGGGAAGAATTCATGCCAATAAAGCATCCAAACTCTCAAGAAAGCACTGAAAAAACATCAAACATATCTGACAAGGCGAATTGGATGACATCAGCTCAACTATGGAGCCAAGCAAGCGAAGGAACCAAACCACAATCCACAATTACATCACCAAAAAACGGTGCTGATATGGGCTTTAGCGTGAGCCCTAATCCAGCCCTAGACAACAAACATAGGAATGGGGGAGCCTTTTTACCATTCTCAAAAGAACGAAACTCGTGCCAAGGATTAAGGGATCTTCCTGAGGTGGCCCTTGCCTCTTCTGAGAAAGAAATGGAGAAGAAGTGTGAATTAGAGTCAGAGAAATGTTCCAAAAGGGAAAATTCAGGCAAAGGATCAGGGAGTTGTGAAGGGGTTGTAGATCAGGGAAAAAGTGCTTCAGTTGCATCTGAGGCACAAACAACAAATACTACCATCACCACCACAACTAACAACACTACTGGCCAAACTCATAGGAAAGCAAGAAGGTGTTGGTCACCGGATTTGCACCGTCGATTTGTTAATGCTCTTCAAATGCTCGGTGGATCTCAAGTGGCCACCCCAAAACAGATTAGGGAGCTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCACACTAGAAGACCTAGTCCAAGCCTACAAACCGGAGCCCCAACACCCCAGCTAGTAGTCTTTGGAGGAATTTGGGTGCCACCGGAGTATGCCAGGGCTGCAGCACACTCTGGTGGCCCCACCCTCTGTGGCCCACATCCTACCTCACATGTGCCACCTCCACACTACTGTGCACCCACCCCAATGCCCCAAGAGTTCTATAACTCGGCTCCGTCACTGTCCTTACCGTCACCAGCACATGAAAACATCCTTCACCACCACCATTTTCACATGTACAAGACAGCACCACAGACCCGAAGCTCTCCAGTGTCTGATGTTCGGAGCGGTGGCGACCGGTCGGAGACCATTGAGGATGGGAAGTCGGAGAGTGGTAGCTGGAAAGCAGAGAATGGAGAGAAGAAAGGGTTGGCAGCACTAAGAGATCAAGAAGGGGATGAGAGCACTGGAAGTGAGATTACTCTTAAATTCTAG

Predicted protein sequences of Glyma04g21680

Limit To All Plant Sequences

>Glyma04g21680.1   sequence type=predicted peptide   gene model=Glyma04g21680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSQVELSMDYKPYSYSTLLKSYADETETDQTHKLEEFLSRLEEERVKIDAFKRELPLCMQLLTNAVEASRQQLQAFRSNQGTRPVREEFMPIKHPNSQESTEKTSNISDKANWMTSAQLWSQASEGTKPQSTITSPKNGADMGFSVSPNPALDNKHRNGGAFLPFSKERNSCQGLRDLPEVALASSEKEMEKKCELESEKCSKRENSGKGSGSCEGVVDQGKSASVASEAQTTNTTITTTTNNTTGQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSLQTGAPTPQLVVFGGIWVPPEYARAAAHSGGPTLCGPHPTSHVPPPHYCAPTPMPQEFYNSAPSLSLPSPAHENILHHHHFHMYKTAPQTRSSPVSDVRSGGDRSETIEDGKSESGSWKAENGEKKGLAALRDQEGDESTGSEITLKF*

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