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Report for Sequence Feature Glyma04g21376

Feature Type:gene_model
Chromosome:Gm04
Start:24400517
stop:24403762
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g21376
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G21250AT Annotation by Michelle Graham. TAIR10: multidrug resistance-associated protein 6 | chr3:7457668-7463261 REVERSE LENGTH=1453 SoyBaseE_val: 5.00E-134ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0000325GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
GO:0042626GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances SoyBaseN/AISS
PTHR24223Panther FAMILY NOT NAMED JGI ISS
PTHR24223:SF203Panther JGI ISS
PF00005PFAM ABC transporter JGI ISS
UniRef100_G8A2S0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Multidrug resistance protein ABC transporter family (Fragment) n=1 Tax=Medicago truncatula RepID=G8A2S0_MEDTR SoyBaseE_val: 8.00E-155ISS
UniRef100_I1KUW0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUW0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g21376
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g21376 not represented in the dataset
Glyma04g21376 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g21376 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma04g21376
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g21376
>Glyma04g21376.1   sequence type=CDS   gene model=Glyma04g21376   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGTTTTTCCAAAGCTACTTGGACTACAAGGCTCAAAACGCACAAGTGACTAATGCTCTCGGAAGCCGAAACGTCGTGCACACTCCAGACATCTTCTCAAAGATCCCAACGGTCAGATCATGGACAAAGATCTGTTTTGAACTTCTTGATATCCCTTTTACCACCATCTTTGTAATATCTGAAATAGATGAACTTCTGACAATGATTGGGATAATGGTTTCGGTCACATGGGAAGTGCTCATTGTTGCAGTTCTTGCCATATTGGCCTCAAAATATGTTCAGGGCTATTATCAAGCCTCTACTAAAGAAATTATACAGATCAATGGAACTACTAAAGCTCCATTTATGAATTTTAGAGTTGAGACATCACTTGGTGTAGTTACTATCAAAACTTTCAACATGGCTGATAGATTTTTCAAAAACTACCTTAATCTTGTTAACACAAATGCCACAATGTTCTTTCATTCCAATGCTGCTATCAAATGGTTAATTCTGATGATTGGATTACTTCAAAATTTGACACTCTTCACTGTAGCTTTGCTGCTTGTTCTACTTCCAAAAAGGATATGCCTTATAGGACTTTTTTTGTCTCATGCTTTTTCATTGACATTAACTGTAGTTTATCTGACTCAAATGTTTTGTAACTTATTAAACTATCCTAGTGCAATTGTAAAGGATAATAGACCACCACCTTCTTGGCCTTCCAAGGGTAGAATAGATCTCCAATCTCTAGAGATTAGATATCAGCCAAATGCTCCATTAGTTCTTAAGGGCATCTCTTATAGGTTTAAAGAAGGGAGTAGAGTGGGAAGGACTGGAAGTGGAAAAACTACACTTATAAGTGCTTTGTTTTGCTTAGTTGAGCCTACCAGAGGTGACATTCTTATTGATGGTATTAATATCTGCTCAATAGGGCTAAAAGATTTGAGAACAAAGCTAAGCATCATTCCTCAAGAACCAACTCTTTTCAAGGGCAACATTCAAAAGAACTTGGACCCTCTATGCTTGTACTCTAATAATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGCAACAATTAGTAGTCTATCAAATCTCTTGGACAGTTCTGGTAGTGTGGCACAACGTCAACTCAAATGTCTCGGAAGATTGCTTCTTAAGAGGAACAAAATTATTGTAATAGAC
Predicted protein sequences of Glyma04g21376
>Glyma04g21376.1   sequence type=predicted peptide   gene model=Glyma04g21376   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTFFQSYLDYKAQNAQVTNALGSRNVVHTPDIFSKIPTVRSWTKICFELLDIPFTTIFVISEIDELLTMIGIMVSVTWEVLIVAVLAILASKYVQGYYQASTKEIIQINGTTKAPFMNFRVETSLGVVTIKTFNMADRFFKNYLNLVNTNATMFFHSNAAIKWLILMIGLLQNLTLFTVALLLVLLPKRICLIGLFLSHAFSLTLTVVYLTQMFCNLLNYPSAIVKDNRPPPSWPSKGRIDLQSLEIRYQPNAPLVLKGISYRFKEGSRVGRTGSGKTTLISALFCLVEPTRGDILIDGINICSIGLKDLRTKLSIIPQEPTLFKGNIQKNLDPLCLYSNNEIWKALEKCQLKATISSLSNLLDSSGSVAQRQLKCLGRLLLKRNKIIVID






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