Glyma04g21330 - SoyBase

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Report for Sequence Feature Glyma04g21330

Feature Type:	gene_model
Chromosome:	Gm04
Start:	24381226
stop:	24382959
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g21330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19970	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:6747550-6748641 FORWARD LENGTH=363	SoyBase	E_val: 1.00E-103	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00646	PFAM	F-box domain	JGI		ISS
UniRef100_B6TDX7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box domain containing protein n=1 Tax=Zea mays RepID=B6TDX7_MAIZE	SoyBase	E_val: 1.00E-83	ISS
UniRef100_I1JW82	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JW82_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g21330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g21330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g150400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g21330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g21330

Limit To All Plant Sequences

>Glyma04g21330.2   sequence type=CDS   gene model=Glyma04g21330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCATAGTTTGTCTGATCAATACTCATTGTTCGTCTTCACAACGACTTTGTCATATAAATTTTTCATCCCACAACCCCACACACGCCCACCTGAAACCCAAAACCACTAACACACTCCACTTTCGTTACATGGACGACCACCGAAACTCAACACCAAAAAACGCCATTGGCCTCTGCCTCCTCCCACAGGAACTCATCCAAAACATCTTCCTCTCCCTCGTACTCCCCGAAATCATTCGTTTAAAACTCGTCAACAAGTCCTTCTCGCGAATAATCTCCGACCACGCCTTCGTTCGCCAGTGCAACAATTTCTCCACCTCCACTACGTGGCTCTTCGTCTACAAAAAACGCTGGCTCCGCGACGCCGTGCTCCACGCCTTCACCGACCGGAGCTCCGACCGATGGTTCCGCATCCCCATATCAGAGCTTCTCAAACCGATCCACTTTCACGGCGAGGACCTCTACTTCCTCGCCGCCTCCAACAACGTCTTCCTCTTCGCCTCCAACACCGTCCTCGAAGTCGTCGCCGTTAACCTAATCACCGTCACCGTTAAGAAGATCCCCCCTTCCCCGTTGGGTCCACGTGGCACCTCCTCGTGGAGACGCTCCGGGATGAAGCTCGTCACCGACTCCTCCGGTTCGGGCCAGTTTCGTTTCATGTTCGCTGAGTTCGTTGACAACCGCCCCGTCTTGTTCGCGTACGAGTCCGAAACCGACACGTGGAAGTCAACGGAGGCAGAGGAAGATAATAACAAAGAGTTTTCATTTTCGTTTTCGCCACGTGGCGCGAGTCACGTGTTTCTCAACGTTGTTCACGGGCCTATGGAGAGCGTTCTGGTCGCGGCGACGCCAGAGTGCGACAAGCCCGTAGTTCTACGGCCCAGATTCAACGTGACTGAGGCTAATGATGATCTGACGGTTGGATTTAGTTGGGGGAACGTGATGGACATGTTACACGTGTACGGCGATGGGTACATGATGATTGTGAAATCGGAGGGTGGGAACACGAGGAACGTGAGGGTGTTGAAGGGAGTGGAGCTTTGGGGTTTGAGTTTGAACGGGAGAAAGTGGGAGTTTGTGTCTGCGGTTCCTGGTGTGATTGAGAAGCCTTACGCGGCAATGATGGGTTGCTTAGAGGAGAAAAACGGTGTCGTTAGGGCTGCGTTGGTTTCTAATTGTGAGGGAGTTTGGGACATGACGTGGCTCTCTTTTGATACCAGGTGGAACCGGTGGACGTTTATGCCCCTCCCTGATTGCAAAATGAAGGGTTGGAACATGGCTGGTATAAGCTTCTCCTCTGGACTTACCTTGCCATGA

Predicted protein sequences of Glyma04g21330

Limit To All Plant Sequences

>Glyma04g21330.2   sequence type=predicted peptide   gene model=Glyma04g21330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLIVCLINTHCSSSQRLCHINFSSHNPTHAHLKPKTTNTLHFRYMDDHRNSTPKNAIGLCLLPQELIQNIFLSLVLPEIIRLKLVNKSFSRIISDHAFVRQCNNFSTSTTWLFVYKKRWLRDAVLHAFTDRSSDRWFRIPISELLKPIHFHGEDLYFLAASNNVFLFASNTVLEVVAVNLITVTVKKIPPSPLGPRGTSSWRRSGMKLVTDSSGSGQFRFMFAEFVDNRPVLFAYESETDTWKSTEAEEDNNKEFSFSFSPRGASHVFLNVVHGPMESVLVAATPECDKPVVLRPRFNVTEANDDLTVGFSWGNVMDMLHVYGDGYMMIVKSEGGNTRNVRVLKGVELWGLSLNGRKWEFVSAVPGVIEKPYAAMMGCLEEKNGVVRAALVSNCEGVWDMTWLSFDTRWNRWTFMPLPDCKMKGWNMAGISFSSGLTLP*

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