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Report for Sequence Feature Glyma04g21250

Feature Type:gene_model
Chromosome:Gm04
Start:24360481
stop:24363528
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g21250
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G40120AT Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr2:16755137-16757258 REVERSE LENGTH=570 SoyBaseE_val: 1.00E-149ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0046777GO-bp Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0662 KOG Cyclin-dependent kinase CDK5 JGI ISS
PTHR24058Panther DUAL SPECIFICITY PROTEIN KINASE JGI ISS
PTHR24058:SF21Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_B9T562UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9T562_RICCO SoyBaseE_val: 1.00E-158ISS
UniRef100_UPI00023393A5UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023393A5 related cluster n=1 Tax=unknown RepID=UPI00023393A5 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g21250
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g21250 not represented in the dataset
Glyma04g21250 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g21250 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g150300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g21250
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g21250
>Glyma04g21250.1   sequence type=CDS   gene model=Glyma04g21250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCATTTGATCTGAGAATTATACATAGAAAGAATAGGACTGGATTTGAAGAAAACAAGGAACTGCCCATTGTGCTAAATACAGTCTTGGCTGGAAGGCATTATGTAACAGAATATCTTTGTTCAGCTGCCTTCAGTAGGGTTGTTCAGGCACATGATCTTCAGACAGGAATAGATGTTTGCTTGAAGATCATTAAAAATGACAAATACTTTTTTGATCAAAGCTTAGATGAAATCAAGCTTCTAAAACTTGTCAATAAGCATGACCCACCAGATCTACACCACTTTTTGCGCCTTTATGATTATTTCTACCATCAGGAGCATTTATTCATTGTAACTGAACTTCTGCAAGCAAACTTGTACGAATTTCAGAAGTTCAAGCAAGAATCTGGAGGGGAAGAATATTTTACGTTGAACAAATTGCAGCTCATTACTCGCCAATGTTTGGAAGCATTGCAATACTTGCATAGCTTGGGAATTGTTCACTGTGACCTGAAGCCAGAGAACATTCTAATCAAAAGTTACAGAAGATGTCAGATAAAGGTTATTGATCTAGCAGGAAGCAGTTGCTTCCAAACAGACAATTTGTGTCTATATGTACAATCCCGATCCTATAGAGCTCCTGAAGTGATGTTAGGCCTTCAATATGATGAAAAGATTGATATATGGTCTCTCGGCTGTATCTTGGCAGAGTTATGCTCTGGTGAAGTACTATTTCCAAATGATGCAGTTGTGATGATTCTAGCACGCATGATTGGAATGTTGGTGGCATTTTACGTGATGTCTATGCACAGAAGGGTGACGAGAAGCAATGGACACAGGCTGCTAGAGCGTACCTATTCCATCTACTTGGGTGTATTGTATTTGTTGTGTAGCTGTAAGAGAATACACATTACGGATAGCTGA
Predicted protein sequences of Glyma04g21250
>Glyma04g21250.1   sequence type=predicted peptide   gene model=Glyma04g21250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
PFDLRIIHRKNRTGFEENKELPIVLNTVLAGRHYVTEYLCSAAFSRVVQAHDLQTGIDVCLKIIKNDKYFFDQSLDEIKLLKLVNKHDPPDLHHFLRLYDYFYHQEHLFIVTELLQANLYEFQKFKQESGGEEYFTLNKLQLITRQCLEALQYLHSLGIVHCDLKPENILIKSYRRCQIKVIDLAGSSCFQTDNLCLYVQSRSYRAPEVMLGLQYDEKIDIWSLGCILAELCSGEVLFPNDAVVMILARMIGMLVAFYVMSMHRRVTRSNGHRLLERTYSIYLGVLYLLCSCKRIHITDS*






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