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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma04g21090

Feature Type:gene_model
Chromosome:Gm04
Start:24098847
stop:24113589
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g21090
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20060AT Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr5:6776800-6779447 FORWARD LENGTH=252 SoyBaseE_val: 5.00E-145ISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
KOG2112 KOG Lysophospholipase JGI ISS
PTHR10655Panther LYSOPHOSPHOLIPASE-RELATED JGI ISS
PTHR10655:SF5Panther CARBOXYLESTERASE JGI ISS
PF02230PFAM Phospholipase/Carboxylesterase JGI ISS
UniRef100_B9SEM5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Acyl-protein thioesterase, putative n=1 Tax=Ricinus communis RepID=B9SEM5_RICCO SoyBaseE_val: 9.00E-166ISS
UniRef100_C6THL5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6THL5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g21090
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g21090 not represented in the dataset
Glyma04g21090 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g21090 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g149900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g21090
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g21090
>Glyma04g21090.2   sequence type=transcript   gene model=Glyma04g21090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCACAAAGCTTAGTACTCTTTTTTTGGTCTCTGGAGTTACACCACAGCCACGGAGGTTTGTCTCTAGGACTGCTCATTAGGTAGTTTTTTATTTAGAGGCTAACATGAGCTTTGCTGCGCCATCACTTGGTTCTGCTGGTGGTAGATCTGCTAGAAGAGCATTTGAGTTTGGGAGAACCTATGTTGTCAGGCCTAAAGGTAAACACCAAGCAACTATAGTCTGGTTGCATGGCCTCGGGGATAATGGCTCCAGTTGGTCCCAGCTATTAGAGACCCTTCCTCTTCCAAATATTAAATGGATATGTCCGACTGCTCCTACTCAGCCAATATCTATATTTGGTGGCTTTCCGTCCACTGCTTGGTTTGATGTTGGAGATATTTCAGAAGATGCTCCTGATGATCTAGAAGGTTTGGATGCTTCTGCTGCACATGTTGCAAATTTGCTGTCTACAGAACCTGCAGACATTAAGCTTGGTGTTGGAGGGTTCAGTATGGGAGCAGCTACTGCCCTGTACTCCGTGTCCTGCTTTACTGCTGGAAAATATGGGAATGGCAATCCTTATCCGGCCAACCTAAGTGCAGCTGTTGGTTTAAGTGGCTGGCTTCCATGCTCAAAGACCTTGAGTAACAAGTTACAAGGGGTAGATGAAGCTACAAGGCGTGCTCAGTCCTTTCCTGTTTTGCTGTGTCATGGAAAAGTTGACGATGTTGTTCCTTATAAGTTTGGTGAGAAATCATCGAAGTGCTTAAGTTCAACTGGATTTCAGGATGTAACTTTTAAAGCTTATAATGGGCTTGGACACTACACAATTCCAGAAGAGATGGATGAGGTTTGTGCTTGGCTAACATCAAAATTGAGCCTTGAGGGGAATACAGTTTAGTTAGCAAGCAAATGAAGCAAACTGTGAAAAATAATTCTTTTCGTTTTTGGTCCATTGTAATTTTTTGTTATTCCAGATTTGCTTAGATTTCTGTTGATGGTATGCATAATATATCCGCTACCCATTTTGTGAACACTTGAGTCTGAGGGAATCTTCATGACAAGGTACTGTTATTGAAACAAAACATGGTGGTTCTTAAAGCATGGTGATGGAATGCTGCTATTATGCCGAAGAGGATTCTACAATGCTAGTTGGGATTTCGTTTTGTCAAATGATCTTTATGGATACAGCTTGTGGAGCGCTGATCTTTCAGTGGGCTTCCCAAGTGGGACTAATTATTACCATGGTTGTACATGGTTTCATTTTGTATAACTTTCATTGTTTTTTGAAACTGGATTAGACTGACTGGTTTGAGTGTTTGACAGGTAGACTGTCGATCTTCTGACCAGTTCGTTGACACACAAAAAAAGCGAATCCTTTTTAGAATCAGTAAAAAATATCAGTCAAGAACTAGTCAAAAACTGAGCCTAGTTAAAAATTGGATTGAACTAATGTTTTTTAAAAATGTTTTCAGCGTTATT
Coding sequences of Glyma04g21090
>Glyma04g21090.1   sequence type=CDS   gene model=Glyma04g21090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTTTGCTGCGCCATCACTTGGTTCTGCTGGTGGTAGATCTGCTAGAAGAGCATTTGAGTTTGGGAGAACCTATGTTGTCAGGCCTAAAGGTAAACACCAAGCAACTATAGTCTGGTTGCATGGCCTCGGGGATAATGGCTCCAGTTGGTCCCAGCTATTAGAGACCCTTCCTCTTCCAAATATTAAATGGATATGTCCGACTGCTCCTACTCAGCCAATATCTATATTTGGTGGCTTTCCGTCCACTGCTTGGTTTGATGTTGGAGATATTTCAGAAGATGCTCCTGATGATCTAGAAGGTTTGGATGCTTCTGCTGCACATGTTGCAAATTTGCTGTCTACAGAACCTGCAGACATTAAGCTTGGTGTTGGAGGGTTCAGTATGGGAGCAGCTACTGCCCTGTACTCCGTGTCCTGCTTTACTGCTGGAAAATATGGGAATGGCAATCCTTATCCGGCCAACCTAAGTGCAGCTGTTGGTTTAAGTGGCTGGCTTCCATGCTCAAAGACCTTGAGTAACAAGTTACAAGGGGTAGATGAAGCTACAAGGCGTGCTCAGTCCTTTCCTGTTTTGCTGTGTCATGGAAAAGTTGACGATGTTGTTCCTTATAAGTTTGGTGAGAAATCATCGAAGTGCTTAAGTTCAACTGGATTTCAGGATGTAACTTTTAAAGCTTATAATGGGCTTGGACACTACACAATTCCAGAAGAGATGGATGAGGTTTGTGCTTGGCTAACATCAAAATTGAGCCTTGAGGGGAATACAGTTTAG

>Glyma04g21090.2   sequence type=CDS   gene model=Glyma04g21090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTTTGCTGCGCCATCACTTGGTTCTGCTGGTGGTAGATCTGCTAGAAGAGCATTTGAGTTTGGGAGAACCTATGTTGTCAGGCCTAAAGGTAAACACCAAGCAACTATAGTCTGGTTGCATGGCCTCGGGGATAATGGCTCCAGTTGGTCCCAGCTATTAGAGACCCTTCCTCTTCCAAATATTAAATGGATATGTCCGACTGCTCCTACTCAGCCAATATCTATATTTGGTGGCTTTCCGTCCACTGCTTGGTTTGATGTTGGAGATATTTCAGAAGATGCTCCTGATGATCTAGAAGGTTTGGATGCTTCTGCTGCACATGTTGCAAATTTGCTGTCTACAGAACCTGCAGACATTAAGCTTGGTGTTGGAGGGTTCAGTATGGGAGCAGCTACTGCCCTGTACTCCGTGTCCTGCTTTACTGCTGGAAAATATGGGAATGGCAATCCTTATCCGGCCAACCTAAGTGCAGCTGTTGGTTTAAGTGGCTGGCTTCCATGCTCAAAGACCTTGAGTAACAAGTTACAAGGGGTAGATGAAGCTACAAGGCGTGCTCAGTCCTTTCCTGTTTTGCTGTGTCATGGAAAAGTTGACGATGTTGTTCCTTATAAGTTTGGTGAGAAATCATCGAAGTGCTTAAGTTCAACTGGATTTCAGGATGTAACTTTTAAAGCTTATAATGGGCTTGGACACTACACAATTCCAGAAGAGATGGATGAGGTTTGTGCTTGGCTAACATCAAAATTGAGCCTTGAGGGGAATACAGTTTAG
Predicted protein sequences of Glyma04g21090
>Glyma04g21090.1   sequence type=predicted peptide   gene model=Glyma04g21090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFAAPSLGSAGGRSARRAFEFGRTYVVRPKGKHQATIVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTQPISIFGGFPSTAWFDVGDISEDAPDDLEGLDASAAHVANLLSTEPADIKLGVGGFSMGAATALYSVSCFTAGKYGNGNPYPANLSAAVGLSGWLPCSKTLSNKLQGVDEATRRAQSFPVLLCHGKVDDVVPYKFGEKSSKCLSSTGFQDVTFKAYNGLGHYTIPEEMDEVCAWLTSKLSLEGNTV*

>Glyma04g21090.2   sequence type=predicted peptide   gene model=Glyma04g21090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFAAPSLGSAGGRSARRAFEFGRTYVVRPKGKHQATIVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTQPISIFGGFPSTAWFDVGDISEDAPDDLEGLDASAAHVANLLSTEPADIKLGVGGFSMGAATALYSVSCFTAGKYGNGNPYPANLSAAVGLSGWLPCSKTLSNKLQGVDEATRRAQSFPVLLCHGKVDDVVPYKFGEKSSKCLSSTGFQDVTFKAYNGLGHYTIPEEMDEVCAWLTSKLSLEGNTV*






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