Glyma04g20850 - SoyBase

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Report for Sequence Feature Glyma04g20850

Feature Type:	gene_model
Chromosome:	Gm04
Start:	23704196
stop:	23711098
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g20850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04870	AT	Annotation by Michelle Graham. TAIR10: protein arginine methyltransferase 10 \| chr1:1373485-1375598 REVERSE LENGTH=383	SoyBase	E_val: 0	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0019919	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	SoyBase	N/A	ISS
GO:0034968	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone lysine methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008469	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone-arginine N-methyltransferase activity	SoyBase	N/A	ISS
GO:0016277	GO-mf	Annotation by Michelle Graham. GO Molecular Function: [myelin basic protein]-arginine N-methyltransferase activity	SoyBase	N/A	ISS
GO:0035241	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein-arginine omega-N monomethyltransferase activity	SoyBase	N/A	ISS
GO:0035242	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein-arginine omega-N asymmetric methyltransferase activity	SoyBase	N/A	ISS
KOG1499	KOG	Protein arginine N-methyltransferase PRMT1 and related enzymes	JGI		ISS
PTHR11006	Panther	PROTEIN ARGININE N-METHYLTRANSFERASE	JGI		ISS
PTHR11006:SF34	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF05185	PFAM	PRMT5 arginine-N-methyltransferase	JGI		ISS
UniRef100_D7KE86	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Arginine N-methyltransferase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KE86_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1JW77	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JW77_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g20850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g20850 not represented in the dataset	Glyma04g20850 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g20850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g149600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g20850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g20850

Limit To All Plant Sequences

>Glyma04g20850.2   sequence type=transcript   gene model=Glyma04g20850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGAGAGTTGAATAATAAAACCCGAAAACACAGCTCATAAAAATAACGGTAGACTAGAGAAGCAAAGCAAAGGCCGCCCTTGCAGTGCCGCCAAAGCAACCCTGCCCTAAAAATTGAACAGGGCAGAGAGCGAGTGAACATGGGAACCTCCGCGAACGCTGTCGCAGGTGGTCGTGGCGGCGCCCCTGTCCCCAAAGACGTCGACTACGCCAATTACTTCTGCACCTACGCTTTCCTCTACCACCAGAAGGAGATGCTCTCCGACCGCGTTCGCATGGACGCTTATTTCAACGCCATTTTTGAAAACAAACGCCACTTCGCTGGCAAGACTGTTTTGGATGTGGGGACTGGAAGTGGCATTCTTGCTATATGGTCGGCACAGGCAGGTGCGAGGAAGGTGTATGCAGTGGAAGCTACCAAGATGTCGGAACACGCACGTGCACTCATCAAAGCGAATAATCTCCAGGACGTAGTTGAGGTCATCGAGGGATCGATGGAGGAAGTTACCTTGCCAGAGAGAGTTGATGTGATCATCTCTGAATGGATGGGTTATTTTCTTCTGCGTGAATCTATGTTTGATTCAGTTATACATGCTCGTGATTGCTGGCTCAAACCGACAGGAGTGATGTATCCTAGTCATGCTCGCATGTGGATGGCACCTATCCGGACTGGGATAGTAGATCACAAATTGGGTGATTATGAGTCGACTATGGATGATTGGCACAACTTTGTTGATGAAACAAAAACCTACTATGGTGTTGATATGGGCACTTTAACGAAACCTTTTTCAGAGGAGCAGAGGAAATATTATCTACAGACATCATTGTGGAACAGCCTTCATCCCCATCAAGTCATAGGAACTGCTGGTATAATAAAGGAAATTGATTGTTTAACTGCCACTGTGGCTGACATAGAGAAAGTTAGATCAAATTTTTCTATGTCAATAACCGTGGAAAACACAAAGTTATGTGGATTTGGAGGGTGGTTTGATGTACATTTTCGGGGAAGAAGTGAGGATCCAGCTGAACACGAGATTGAGTTAACTACAGCTCCCAGTGTAGATTATGGTACACACTGGGGCCAACAGGTTTTCCTCTTGCATCCTCCCATGCGTCTGAATGAAGGTGATGATTTAAGGGTTTCTTTTCTAATGAGTCGCTCAAAGGAAAACCATCGTTTGATGGAGGTTGAACTTGGATGTGAGATTCATCAGCATTCTGGCAAGATACTTGCACCTTTCAAAAATAAGTACTACATTGAGTAGCAAACTGGATTTCAAATTCTGGGGACTGCAAGATACAAGGAACGGCTCATATTTTGTAATCATATAGAATTGTATGGTTCTTAATTATGTAGTAAGAGGAAAAAAAGTAGTTGCCGCCATTTGCAACATACCGGTTTCCAATCATTTGGTTGTTAATGACTTGCCACTCAAGTACGTTTAGCATGCCTCAGTGGTGATGATTGGATAACCCTCGTCGTGCTGGTTGTGTTTACCTGTGTTTTAAGGGAAGCATGTGGCCCTTTTAGTTTTATAATATTTTCTGCTGAAGTTTGTATTAGTTGGTTAATTATATAGGATTCCTGATATTTTTTCTGTTTTGGCGTTCCATCTTACAACAAACTTTTCTTTTTCAATTGGCGTTTATAATTATACGACGAGACAATAGTGATGTTGTGATCTGTTGGATATAGAGATTTCCTTGTTTGGCAAACAAGGCTTTGGATATTGGTGCATAAAGTCACCGGCTCTAAAAAGTTTCATCGGAGATTTAGGATTTTGGACAAACTTTTTCATAAG

Coding sequences of Glyma04g20850

Limit To All Plant Sequences

>Glyma04g20850.1   sequence type=CDS   gene model=Glyma04g20850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAACCTCCGCGAACGCTGTCGCAGGTGGTCGTGGCGGCGCCCCTGTCCCCAAAGACGTCGACTACGCCAATTACTTCTGCACCTACGCTTTCCTCTACCACCAGAAGGAGATGCTCTCCGACCGCGTTCGCATGGACGCTTATTTCAACGCCATTTTTGAAAACAAACGCCACTTCGCTGGCAAGACTGTTTTGGATGTGGGGACTGGAAGTGGCATTCTTGCTATATGGTCGGCACAGGCAGGTGCGAGGAAGGTGTATGCAGTGGAAGCTACCAAGATGTCGGAACACGCACGTGCACTCATCAAAGCGAATAATCTCCAGGACGTAGTTGAGGTCATCGAGGGATCGATGGAGGAAGTTACCTTGCCAGAGAGAGTTGATGTGATCATCTCTGAATGGATGGGTTATTTTCTTCTGCGTGAATCTATGTTTGATTCAGTTATACATGCTCGTGATTGCTGGCTCAAACCGACAGGAGTGATGTATCCTAGTCATGCTCGCATGTGGATGGCACCTATCCGGACTGGGATAGTAGATCACAAATTGGGTGATTATGAGTCGACTATGGATGATTGGCACAACTTTGTTGATGAAACAAAAACCTACTATGGTGTTGATATGGGCACTTTAACGAAACCTTTTTCAGAGGAGCAGAGGAAATATTATCTACAGACATCATTGTGGAACAGCCTTCATCCCCATCAAGTCATAGGAACTGCTGGTATAATAAAGGAAATTGATTGTTTAACTGCCACTGTGGCTGACATAGAGAAAGTTAGATCAAATTTTTCTATGTCAATAACCGTGGAAAACACAAAGTTATGTGGATTTGGAGGGTGGTTTGATGTACATTTTCGGGGAAGAAGTGAGGATCCAGCTGAACACGAGATTGAGTTAACTACAGCTCCCAGTGTAGATTATGGTACACACTGGGGCCAACAGGTTTTCCTCTTGCATCCTCCCATGCGTCTGAATGAAGGTGATGATTTAAGGGTTTCTTTTCTAATGAGTCGCTCAAAGGAAAACCATCGTTTGATGGAGGTTGAACTTGGATGTGAGATTCATCAGCATTCTGGCAAGATACTTGCACCTTTCAAAAATAAGTACTACATTGAGTAG

>Glyma04g20850.2   sequence type=CDS   gene model=Glyma04g20850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAACCTCCGCGAACGCTGTCGCAGGTGGTCGTGGCGGCGCCCCTGTCCCCAAAGACGTCGACTACGCCAATTACTTCTGCACCTACGCTTTCCTCTACCACCAGAAGGAGATGCTCTCCGACCGCGTTCGCATGGACGCTTATTTCAACGCCATTTTTGAAAACAAACGCCACTTCGCTGGCAAGACTGTTTTGGATGTGGGGACTGGAAGTGGCATTCTTGCTATATGGTCGGCACAGGCAGGTGCGAGGAAGGTGTATGCAGTGGAAGCTACCAAGATGTCGGAACACGCACGTGCACTCATCAAAGCGAATAATCTCCAGGACGTAGTTGAGGTCATCGAGGGATCGATGGAGGAAGTTACCTTGCCAGAGAGAGTTGATGTGATCATCTCTGAATGGATGGGTTATTTTCTTCTGCGTGAATCTATGTTTGATTCAGTTATACATGCTCGTGATTGCTGGCTCAAACCGACAGGAGTGATGTATCCTAGTCATGCTCGCATGTGGATGGCACCTATCCGGACTGGGATAGTAGATCACAAATTGGGTGATTATGAGTCGACTATGGATGATTGGCACAACTTTGTTGATGAAACAAAAACCTACTATGGTGTTGATATGGGCACTTTAACGAAACCTTTTTCAGAGGAGCAGAGGAAATATTATCTACAGACATCATTGTGGAACAGCCTTCATCCCCATCAAGTCATAGGAACTGCTGGTATAATAAAGGAAATTGATTGTTTAACTGCCACTGTGGCTGACATAGAGAAAGTTAGATCAAATTTTTCTATGTCAATAACCGTGGAAAACACAAAGTTATGTGGATTTGGAGGGTGGTTTGATGTACATTTTCGGGGAAGAAGTGAGGATCCAGCTGAACACGAGATTGAGTTAACTACAGCTCCCAGTGTAGATTATGGTACACACTGGGGCCAACAGGTTTTCCTCTTGCATCCTCCCATGCGTCTGAATGAAGGTGATGATTTAAGGGTTTCTTTTCTAATGAGTCGCTCAAAGGAAAACCATCGTTTGATGGAGGTTGAACTTGGATGTGAGATTCATCAGCATTCTGGCAAGATACTTGCACCTTTCAAAAATAAGTACTACATTGAGTAG

Predicted protein sequences of Glyma04g20850

Limit To All Plant Sequences

>Glyma04g20850.1   sequence type=predicted peptide   gene model=Glyma04g20850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTSANAVAGGRGGAPVPKDVDYANYFCTYAFLYHQKEMLSDRVRMDAYFNAIFENKRHFAGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSEHARALIKANNLQDVVEVIEGSMEEVTLPERVDVIISEWMGYFLLRESMFDSVIHARDCWLKPTGVMYPSHARMWMAPIRTGIVDHKLGDYESTMDDWHNFVDETKTYYGVDMGTLTKPFSEEQRKYYLQTSLWNSLHPHQVIGTAGIIKEIDCLTATVADIEKVRSNFSMSITVENTKLCGFGGWFDVHFRGRSEDPAEHEIELTTAPSVDYGTHWGQQVFLLHPPMRLNEGDDLRVSFLMSRSKENHRLMEVELGCEIHQHSGKILAPFKNKYYIE*

>Glyma04g20850.2   sequence type=predicted peptide   gene model=Glyma04g20850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTSANAVAGGRGGAPVPKDVDYANYFCTYAFLYHQKEMLSDRVRMDAYFNAIFENKRHFAGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSEHARALIKANNLQDVVEVIEGSMEEVTLPERVDVIISEWMGYFLLRESMFDSVIHARDCWLKPTGVMYPSHARMWMAPIRTGIVDHKLGDYESTMDDWHNFVDETKTYYGVDMGTLTKPFSEEQRKYYLQTSLWNSLHPHQVIGTAGIIKEIDCLTATVADIEKVRSNFSMSITVENTKLCGFGGWFDVHFRGRSEDPAEHEIELTTAPSVDYGTHWGQQVFLLHPPMRLNEGDDLRVSFLMSRSKENHRLMEVELGCEIHQHSGKILAPFKNKYYIE*

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