Report for Sequence Feature Glyma04g20400
Feature Type: gene_model
Chromosome: Gm04
Start: 22435029
stop: 22443669
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g20400
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G25770 AT
Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr4:13117821-13119982 REVERSE LENGTH=418
SoyBase E_val: 2.00E-175 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
KOG4372
KOG
Predicted alpha/beta hydrolase
JGI ISS
PTHR12482 Panther
UNCHARACTERIZED
JGI ISS
PF05057 PFAM
Putative serine esterase (DUF676)
JGI ISS
UniRef100_G7JD33 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Serine esterase family protein n=1 Tax=Medicago truncatula RepID=G7JD33_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI0001BA87B3 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0001BA87B3 related cluster n=1 Tax=unknown RepID=UPI0001BA87B3
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g20400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma04g20400 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g146800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g20400
Coding sequences of Glyma04g20400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g20400.3 sequence type=CDS gene model=Glyma04g20400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTGGCCTCAGACTCCGGCTCTGTGCTCCGACCCAAACCCCCCGTACCCACTCTTGACCCGACCCGTTCACTGCTCCGCCCTTTCTGCTTCGATCCAGGATCCAGACCCGCCCGGCCCAGTCTCTCCCTCAAAATGGAACTGCTCCGCCGAATGAGCCGCGGCTGCTTCAAGACCGAGGTCGATTCCGCCGGCCAGGACTTCTTCGACGCCGCCGCCGCCGCGGCGCCCAACCCGGCTCCTCACCACCTTGTTATTATGGTTAACGGAATCATTGGGAGTGCTGCTGATTGGAGATATGCTGCAGAGCAGTTTGTGAAGAAGCTTCCAGATAAAGTGATTGTACACCGCAGTGAATGCAATTCTTCAAAATTGACGTTTGATGGTGTTGATACAATGGGCGAGAGGCTAGCTGAAGAGGTATTATCTGTTGTTAAACGTTGGCCAGAGGTGCAGAAGATATCCTTTGTGGCGCATTCTCTAGGAGGCTTGGTGGCAAGATATGCTATTGGGAGACTTTATGATTATTCTTCAACATTGGCACTTGTTGGTACCAGTAGAGACTATTTCAATGAAGAGAAAACAGAATTTTCAAAGCAATTCCTTGAACAGAGTTATGAAGCCAAGATTGCTGGTTTAGAGCCCATGAACTTTATAACATTTGCAACACCACATCTCGGTTCAAGAGGAAATAAACAGCTTCCATTTCTTTGCGGTCTTCCTTTCCTTGAGAGAAGAGCATCTGAAACTGCACATTTAGTTGCAGGGAGATCTGGGAAGCATCTCTTCCTCATGGACAATGATGATGGAAAGCGTCCTCTGCTCCTGCGAATGGTTAATGACTCTGACGATTTAAAGTTTATGTCAGCTTTACGTGCATTTAAGCGTCGAGTGGCATATGCAAATGCAAATTATGATCATATGGTAGGATGGCGTACCTCATCAATTCGTCGTCAACATGAACTTCCAAAGTCCAATCTTCTTGTAATTGATGAGAGATACCCACACATTGTTTATGTTGAAGGAGAGACTACGGATGAAATTCGCAATAAAACATCTAATATTGGAGGCCAAATAATTGACTTAGAAGAGGAGATGATAAGGGGGCTCACTCAGGTATCTTGGGAGCGTGTGGATGTTAGCTTTCAGAAAAGTAAACAACGATACGTTGCTCACAGTACAATTCAGGTGAAAACATATTGGTTGAATTCTGATGGTGCTGATGTGGTTTACCATATGATAGATAACTTCCTTCTTTAG
Predicted protein sequences of Glyma04g20400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g20400.3 sequence type=predicted peptide gene model=Glyma04g20400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLASDSGSVLRPKPPVPTLDPTRSLLRPFCFDPGSRPARPSLSLKMELLRRMSRGCFKTEVDSAGQDFFDAAAAAAPNPAPHHLVIMVNGIIGSAADWRYAAEQFVKKLPDKVIVHRSECNSSKLTFDGVDTMGERLAEEVLSVVKRWPEVQKISFVAHSLGGLVARYAIGRLYDYSSTLALVGTSRDYFNEEKTEFSKQFLEQSYEAKIAGLEPMNFITFATPHLGSRGNKQLPFLCGLPFLERRASETAHLVAGRSGKHLFLMDNDDGKRPLLLRMVNDSDDLKFMSALRAFKRRVAYANANYDHMVGWRTSSIRRQHELPKSNLLVIDERYPHIVYVEGETTDEIRNKTSNIGGQIIDLEEEMIRGLTQVSWERVDVSFQKSKQRYVAHSTIQVKTYWLNSDGADVVYHMIDNFLL*