SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G25490 | AT | Annotation by Michelle Graham. TAIR10: EIN3-binding F box protein 1 | chr2:10848018-10850275 REVERSE LENGTH=628 | SoyBase | E_val: 0 | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0010105 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of ethylene mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0042752 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1947 | KOG | Leucine rich repeat proteins, some proteins contain F-box | JGI | ISS | |
| PTHR23125 | Panther | F-BOX/LEUCINE RICH REPEAT PROTEIN | JGI | ISS | |
| PTHR23125:SF106 | Panther | EBF1 (EIN3-BINDING F BOX PROTEIN 1), UBIQUITIN-PRO | JGI | ISS | |
| UniRef100_B9SET7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Grr1, plant, putative n=1 Tax=Ricinus communis RepID=B9SET7_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JW71 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JW71_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g20330 not represented in the dataset |
Glyma04g20330 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g147000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g20330.1 sequence type=CDS gene model=Glyma04g20330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTACCCTTGTCAATTATAGTGGTGATGATGAGCTCTATCATGGGGGTTCCTTCTGTCAAAATCCCATTGATTTGGGTCGCCTGTGTACTTATGGTTCAATTGTGGATGAGTACTACTACACTCCTAGCAAGCGAGCTCGAATCAATGCCCTGGATGCGTTCGAATTTCTAGGGCGAGAGCAAGATCAAAAGCCTACCATTGATGTCCTTCCTGATGAATGCCTTTTTGAGGTTTTCAGATGGCTCTCTAGTGGCAAAGAGAGGAGCTCTTGTGCCTACGTGTCTAAGCGGTGGCTTATGCTCATGAGCAGTATCTGCAAAGCTGAAATTCACAAGTCTGATAAGATGATTGAGGGGTCTGCTTCCGGTTATGTTGAAATGGCCTCAGTGGATGAGGATCAAGGTATTGAAGACAATGGCTACTTAACGCGGTGTTTGGAAGGGAAGAAGGCAACTAATGTAAGGCTTGCTGCAATTGCAGTTGGGACTAGTGCCCGCGGGGGACTTGGAAAGCTGTCTATCAGAGGAAGCAATTCTGTTCGCGGTGTCACAGACGTTGGCCTCTCAGCAGTTGCTCATGGTTGCCCTTCACTTAGATCATTTTCTTTGTGGAATGTGTCTTCTGTTGGTGATGAGGGTCTGTCTGAGATAGCAAAAGGATGCCATATGTTGGAGAAACTTGACATATGCCAGGCCTCCTTCATTAGCAACAAAAGTCTAATTGCAATAGCTAAGGGCTGCCCCAACTTGACCACCTTAAATATCGAATCGTGTCCGAAGATTGGAAACGAGGGGTTGCAAGCTATTGCCAGGTCTTGCCCCAAGTTACAATGCATCTCTATCAAGGATTGTCCTCTTGTTGGGGATCATGGAGTATCAAGTCTATTATCCTCAGCTATTCACCTTTCAAAGGTAAAGCTTCAGGATTTAAACATTACAGATTTCTCTCTGGCTGTCATTGGCCACTATGGAAAGGCAATTTTAAATTTGGTCCTCTGTGGTCTTCAAAATGTCACTGAAAGGGGCTTTTGGGTCATGGGTGTTGCTCAAAGTCTGCAGAAACTGATGTCACTTACAGTTTCTTCCTGCCGAGGGATAACAGATGCAAGCATTGAAGCCATGGGTAAAGGTTGTGTCAACCTAAAGCAGATGTTTCTGCGCAGATGCTGCTTTGTATCCGACAATGGTTTGGTAGCATTTAGCAAAGTTGCAAGCTCTCTTGAGAGCTTGCACTTGGAGGAGTGTAACAACATCAACCAGTTTGGCATTATTTGTGCCCTTTCAAACTTCAAATCGACTTTAAAGTCTCTCACCCTTCTTAAGTGCAAGGGAGTTAAAGATATAGATCTGGAAGTATCTATGTTTCCTCCTTGCGAGTCTCTCCGACATTTATCCATTCATAACTGCCCTGGTGTTGGAAATGCTAGCCTGGCTATGGTTGGGAAATTGTGCCCCCAACTTCAGCATGTTGATCTGACCGGACTTTATGGTCTAACTGATGCCGGCCTTGTTCCTCTTTTGGAGAATTGTGAGGCGGGACTTGTCAAGGTGAACCTTGTCGGCTGCTGGAATTTGACGGATAACATAGTTTCAGTATTGGCCACACTACACGGAGGAACCCTCGAATTGCTAAATCTTGATGGATGCAGGAAGATTACCGACGCAAGCTTGGTTGCAATCGCGGATAACTGCCTTCTGCTTAATGATCTAGATGTGTCAAAGTGTGCAATCACTGATGCCGGTATAGCTGTTCTTTCTAGTGCCAAACAGCTTACTTTGCAAGTGCTTTCTTTGTCAAACTGTTCTGGTGTAACAAACAAGAGTGCGCCTTCCCTAAAAAAGTTGGGCCAGACCTTGGTGGGGTTGAATCTTCAAAACTGCAATTCAATTGGCTGCAACACAGTTGAGTTCCTAGTGGAGAACTTGTGGAGATGTGATATTCTGGCTTAA
>Glyma04g20330.1 sequence type=predicted peptide gene model=Glyma04g20330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPTLVNYSGDDELYHGGSFCQNPIDLGRLCTYGSIVDEYYYTPSKRARINALDAFEFLGREQDQKPTIDVLPDECLFEVFRWLSSGKERSSCAYVSKRWLMLMSSICKAEIHKSDKMIEGSASGYVEMASVDEDQGIEDNGYLTRCLEGKKATNVRLAAIAVGTSARGGLGKLSIRGSNSVRGVTDVGLSAVAHGCPSLRSFSLWNVSSVGDEGLSEIAKGCHMLEKLDICQASFISNKSLIAIAKGCPNLTTLNIESCPKIGNEGLQAIARSCPKLQCISIKDCPLVGDHGVSSLLSSAIHLSKVKLQDLNITDFSLAVIGHYGKAILNLVLCGLQNVTERGFWVMGVAQSLQKLMSLTVSSCRGITDASIEAMGKGCVNLKQMFLRRCCFVSDNGLVAFSKVASSLESLHLEECNNINQFGIICALSNFKSTLKSLTLLKCKGVKDIDLEVSMFPPCESLRHLSIHNCPGVGNASLAMVGKLCPQLQHVDLTGLYGLTDAGLVPLLENCEAGLVKVNLVGCWNLTDNIVSVLATLHGGTLELLNLDGCRKITDASLVAIADNCLLLNDLDVSKCAITDAGIAVLSSAKQLTLQVLSLSNCSGVTNKSAPSLKKLGQTLVGLNLQNCNSIGCNTVEFLVENLWRCDILA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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