Glyma04g19030 - SoyBase

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Report for Sequence Feature Glyma04g19030

Feature Type:	gene_model
Chromosome:	Gm04
Start:	20860569
stop:	20864781
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g19030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26670	AT	Annotation by Michelle Graham. TAIR10: Plant haem oxygenase (decyclizing) family protein \| chr2:11341816-11343394 FORWARD LENGTH=282	SoyBase	E_val: 5.00E-131	ISS
GO:0006788	GO-bp	Annotation by Michelle Graham. GO Biological Process: heme oxidation	SoyBase	N/A	ISS
GO:0009585	GO-bp	Annotation by Michelle Graham. GO Biological Process: red, far-red light phototransduction	SoyBase	N/A	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010019	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast-nucleus signaling pathway	SoyBase	N/A	ISS
GO:0010024	GO-bp	Annotation by Michelle Graham. GO Biological Process: phytochromobilin biosynthetic process	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0016117	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process	SoyBase	N/A	ISS
GO:0071494	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to UV-C	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004392	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme oxygenase (decyclizing) activity	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
KOG4480	KOG	Heme oxygenase	JGI		ISS
PTHR10720	Panther	HEME OXYGENASE	JGI		ISS
PF01126	PFAM	Heme oxygenase	JGI		ISS
UniRef100_I1JW65	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JW65_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q94FX1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heme oxygenase 1 (Fragment) n=1 Tax=Glycine max RepID=Q94FX1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g19030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g19030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g147700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g19030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g19030

Limit To All Plant Sequences

>Glyma04g19030.2   sequence type=transcript   gene model=Glyma04g19030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAAAATCAGTCTAAAATTATTTTAGGTTGTCTTCAATTGCTAACATAGGATAACTACAAAGGCCACGGCTGGCTGACGACAAGAGAAAATAAAAAACCGCATCTGTTCCGTGTAAGGAGAAGTCACAAAATTTCTCAGCTCCTGCCTGTATACTTCACATGGCCTAATCCCACAGTCGCACACTCTTCCACCCTGCCATCACCAATCATCAACACAACGCCCATTATTATTTAAAAATCCTTAATATATTATTATTCTTCGTCCATCGCTTTTTCTTGAAGACTACTTCATCCTTCTTATTAGTTTCTTTTTATTTCAATCTTTCTCACTCGCACGCACGCACGCACAGTCTCTAGTGGTACCGTGCCGGTTCATTTGCTTCATCCACCACCTCATTTTCAGAGATTTCGTGCACTCAACAAACTCTCATCCACCCATGGCGTCATCACTATCAACAATAGCTCTATTCCTGCCCCAATCGCTCTATATTAAGCCCCGCCTGGCGCCACGGCCTCTTCCTCCCCCTCAATTCCGCTCCCTTTTCCTAACCTCACCGGCGGGTGCTCGTACTGCTACTGTCATGCCTAGAAGGGCGGCGGTCATCGTGTCGGCGGCGACGGCGGAGACGCCGAAGAAGAAGGGCGAATCGAAAGGGTTCGTGGAAGAGATGAGGTTCGTGGCGATGAGGCTGCACACGAGGGACCAGGCCAGGGAGGGCGAGAAGGAGGTCAAGCAGCCCGAGGAGAAAGCCGTTACCAAGTGGGACCCATCCGTCGAAGGGTACCTGAAATTTCTTGTGGACAGTAAGCTCGTTTATGACACGCTGGAGAAAATCGTTCAAGAGGCTCCTCATCCTTCTTATGCTGAATTCAGAAACACTGGATTGGAAAGGTCTGCAAGTTTGGCAGAAGATTTGGAGTGGTTCAAGGAGCAAGGTTATACCATTCCTGAACCTTCTTCTCCTGGTCTTACCTATGCACAATATCTTAAGGAGTTATCTGTGAAGGATCCCCAAGCATTCATTTGCCATTTTTACAATATCTACTTTGCTCATTCAGCTGGTGGTCGAATGATTGGGAAAAAGGTAACCAAACACATGCATGCTTAAAGAGGTTAAATTATGTTGTGTGTCACATTGTTTATGAGTACATCTTTGGTTTTGAGTGCTATTTGTGGGCCAGAATATCTGTTTTATGTTTTATAATTACAGACACATTCATATCTGGGGATATTTTCATTTTTCCTCTTCATATGGCATAGTTACTATACTACTCCCTCTGAACTCATA

Coding sequences of Glyma04g19030

Limit To All Plant Sequences

>Glyma04g19030.1   sequence type=CDS   gene model=Glyma04g19030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCATCACTATCAACAATAGCTCTATTCCTGCCCCAATCGCTCTATATTAAGCCCCGCCTGGCGCCACGGCCTCTTCCTCCCCCTCAATTCCGCTCCCTTTTCCTAACCTCACCGGCGGGTGCTCGTACTGCTACTGTCATGCCTAGAAGGGCGGCGGTCATCGTGTCGGCGGCGACGGCGGAGACGCCGAAGAAGAAGGGCGAATCGAAAGGGTTCGTGGAAGAGATGAGGTTCGTGGCGATGAGGCTGCACACGAGGGACCAGGCCAGGGAGGGCGAGAAGGAGGTCAAGCAGCCCGAGGAGAAAGCCGTTACCAAGTGGGACCCATCCGTCGAAGGGTACCTGAAATTTCTTGTGGACAGTAAGCTCGTTTATGACACGCTGGAGAAAATCGTTCAAGAGGCTCCTCATCCTTCTTATGCTGAATTCAGAAACACTGGATTGGAAAGGTCTGCAAGTTTGGCAGAAGATTTGGAGTGGTTCAAGGAGCAAGGTTATACCATTCCTGAACCTTCTTCTCCTGGTCTTACCTATGCACAATATCTTAAGGAGTTATCTGTGAAGGATCCCCAAGCATTCATTTGCCATTTTTACAATATCTACTTTGCTCATTCAGCTGGTGGTCGAATGATTGGGAAAAAGGTTGCTGAAAAGTTACTTAACAACAAGGCGTTGGAGTTCTACAAATGGGATGATGACCTTCCACGATTGTTGCAGAATGTGAGAGACAAGTTGAATAAAGTTGCTGAACCTTGGAGTCGGGAAGAAAAGGACCACTGTCTGGAAGAAACAGAAAAATCATTCAAGCTCTCTGGAGAGATTCTCCGTTTGATTTTATCATGA

>Glyma04g19030.2   sequence type=CDS   gene model=Glyma04g19030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCATCACTATCAACAATAGCTCTATTCCTGCCCCAATCGCTCTATATTAAGCCCCGCCTGGCGCCACGGCCTCTTCCTCCCCCTCAATTCCGCTCCCTTTTCCTAACCTCACCGGCGGGTGCTCGTACTGCTACTGTCATGCCTAGAAGGGCGGCGGTCATCGTGTCGGCGGCGACGGCGGAGACGCCGAAGAAGAAGGGCGAATCGAAAGGGTTCGTGGAAGAGATGAGGTTCGTGGCGATGAGGCTGCACACGAGGGACCAGGCCAGGGAGGGCGAGAAGGAGGTCAAGCAGCCCGAGGAGAAAGCCGTTACCAAGTGGGACCCATCCGTCGAAGGGTACCTGAAATTTCTTGTGGACAGTAAGCTCGTTTATGACACGCTGGAGAAAATCGTTCAAGAGGCTCCTCATCCTTCTTATGCTGAATTCAGAAACACTGGATTGGAAAGGTCTGCAAGTTTGGCAGAAGATTTGGAGTGGTTCAAGGAGCAAGGTTATACCATTCCTGAACCTTCTTCTCCTGGTCTTACCTATGCACAATATCTTAAGGAGTTATCTGTGAAGGATCCCCAAGCATTCATTTGCCATTTTTACAATATCTACTTTGCTCATTCAGCTGGTGGTCGAATGATTGGGAAAAAGGTAACCAAACACATGCATGCTTAA

Predicted protein sequences of Glyma04g19030

Limit To All Plant Sequences

>Glyma04g19030.1   sequence type=predicted peptide   gene model=Glyma04g19030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSLSTIALFLPQSLYIKPRLAPRPLPPPQFRSLFLTSPAGARTATVMPRRAAVIVSAATAETPKKKGESKGFVEEMRFVAMRLHTRDQAREGEKEVKQPEEKAVTKWDPSVEGYLKFLVDSKLVYDTLEKIVQEAPHPSYAEFRNTGLERSASLAEDLEWFKEQGYTIPEPSSPGLTYAQYLKELSVKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKLLNNKALEFYKWDDDLPRLLQNVRDKLNKVAEPWSREEKDHCLEETEKSFKLSGEILRLILS*

>Glyma04g19030.2   sequence type=predicted peptide   gene model=Glyma04g19030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSLSTIALFLPQSLYIKPRLAPRPLPPPQFRSLFLTSPAGARTATVMPRRAAVIVSAATAETPKKKGESKGFVEEMRFVAMRLHTRDQAREGEKEVKQPEEKAVTKWDPSVEGYLKFLVDSKLVYDTLEKIVQEAPHPSYAEFRNTGLERSASLAEDLEWFKEQGYTIPEPSSPGLTYAQYLKELSVKDPQAFICHFYNIYFAHSAGGRMIGKKVTKHMHA*

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