SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G26670 | AT | Annotation by Michelle Graham. TAIR10: Plant haem oxygenase (decyclizing) family protein | chr2:11341816-11343394 FORWARD LENGTH=282 | SoyBase | E_val: 5.00E-131 | ISS |
| GO:0006788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heme oxidation | SoyBase | N/A | ISS |
| GO:0009585 | GO-bp | Annotation by Michelle Graham. GO Biological Process: red, far-red light phototransduction | SoyBase | N/A | ISS |
| GO:0009813 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0010019 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast-nucleus signaling pathway | SoyBase | N/A | ISS |
| GO:0010024 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phytochromobilin biosynthetic process | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0071494 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to UV-C | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004392 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme oxygenase (decyclizing) activity | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| KOG4480 | KOG | Heme oxygenase | JGI | ISS | |
| PTHR10720 | Panther | HEME OXYGENASE | JGI | ISS | |
| PF01126 | PFAM | Heme oxygenase | JGI | ISS | |
| UniRef100_I1JW65 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JW65_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q94FX1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Heme oxygenase 1 (Fragment) n=1 Tax=Glycine max RepID=Q94FX1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g19030 not represented in the dataset |
Glyma04g19030 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g147700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g19030.2 sequence type=transcript gene model=Glyma04g19030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAAAATCAGTCTAAAATTATTTTAGGTTGTCTTCAATTGCTAACATAGGATAACTACAAAGGCCACGGCTGGCTGACGACAAGAGAAAATAAAAAACCGCATCTGTTCCGTGTAAGGAGAAGTCACAAAATTTCTCAGCTCCTGCCTGTATACTTCACATGGCCTAATCCCACAGTCGCACACTCTTCCACCCTGCCATCACCAATCATCAACACAACGCCCATTATTATTTAAAAATCCTTAATATATTATTATTCTTCGTCCATCGCTTTTTCTTGAAGACTACTTCATCCTTCTTATTAGTTTCTTTTTATTTCAATCTTTCTCACTCGCACGCACGCACGCACAGTCTCTAGTGGTACCGTGCCGGTTCATTTGCTTCATCCACCACCTCATTTTCAGAGATTTCGTGCACTCAACAAACTCTCATCCACCCATGGCGTCATCACTATCAACAATAGCTCTATTCCTGCCCCAATCGCTCTATATTAAGCCCCGCCTGGCGCCACGGCCTCTTCCTCCCCCTCAATTCCGCTCCCTTTTCCTAACCTCACCGGCGGGTGCTCGTACTGCTACTGTCATGCCTAGAAGGGCGGCGGTCATCGTGTCGGCGGCGACGGCGGAGACGCCGAAGAAGAAGGGCGAATCGAAAGGGTTCGTGGAAGAGATGAGGTTCGTGGCGATGAGGCTGCACACGAGGGACCAGGCCAGGGAGGGCGAGAAGGAGGTCAAGCAGCCCGAGGAGAAAGCCGTTACCAAGTGGGACCCATCCGTCGAAGGGTACCTGAAATTTCTTGTGGACAGTAAGCTCGTTTATGACACGCTGGAGAAAATCGTTCAAGAGGCTCCTCATCCTTCTTATGCTGAATTCAGAAACACTGGATTGGAAAGGTCTGCAAGTTTGGCAGAAGATTTGGAGTGGTTCAAGGAGCAAGGTTATACCATTCCTGAACCTTCTTCTCCTGGTCTTACCTATGCACAATATCTTAAGGAGTTATCTGTGAAGGATCCCCAAGCATTCATTTGCCATTTTTACAATATCTACTTTGCTCATTCAGCTGGTGGTCGAATGATTGGGAAAAAGGTAACCAAACACATGCATGCTTAAAGAGGTTAAATTATGTTGTGTGTCACATTGTTTATGAGTACATCTTTGGTTTTGAGTGCTATTTGTGGGCCAGAATATCTGTTTTATGTTTTATAATTACAGACACATTCATATCTGGGGATATTTTCATTTTTCCTCTTCATATGGCATAGTTACTATACTACTCCCTCTGAACTCATA
>Glyma04g19030.1 sequence type=CDS gene model=Glyma04g19030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCATCACTATCAACAATAGCTCTATTCCTGCCCCAATCGCTCTATATTAAGCCCCGCCTGGCGCCACGGCCTCTTCCTCCCCCTCAATTCCGCTCCCTTTTCCTAACCTCACCGGCGGGTGCTCGTACTGCTACTGTCATGCCTAGAAGGGCGGCGGTCATCGTGTCGGCGGCGACGGCGGAGACGCCGAAGAAGAAGGGCGAATCGAAAGGGTTCGTGGAAGAGATGAGGTTCGTGGCGATGAGGCTGCACACGAGGGACCAGGCCAGGGAGGGCGAGAAGGAGGTCAAGCAGCCCGAGGAGAAAGCCGTTACCAAGTGGGACCCATCCGTCGAAGGGTACCTGAAATTTCTTGTGGACAGTAAGCTCGTTTATGACACGCTGGAGAAAATCGTTCAAGAGGCTCCTCATCCTTCTTATGCTGAATTCAGAAACACTGGATTGGAAAGGTCTGCAAGTTTGGCAGAAGATTTGGAGTGGTTCAAGGAGCAAGGTTATACCATTCCTGAACCTTCTTCTCCTGGTCTTACCTATGCACAATATCTTAAGGAGTTATCTGTGAAGGATCCCCAAGCATTCATTTGCCATTTTTACAATATCTACTTTGCTCATTCAGCTGGTGGTCGAATGATTGGGAAAAAGGTTGCTGAAAAGTTACTTAACAACAAGGCGTTGGAGTTCTACAAATGGGATGATGACCTTCCACGATTGTTGCAGAATGTGAGAGACAAGTTGAATAAAGTTGCTGAACCTTGGAGTCGGGAAGAAAAGGACCACTGTCTGGAAGAAACAGAAAAATCATTCAAGCTCTCTGGAGAGATTCTCCGTTTGATTTTATCATGA >Glyma04g19030.2 sequence type=CDS gene model=Glyma04g19030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCATCACTATCAACAATAGCTCTATTCCTGCCCCAATCGCTCTATATTAAGCCCCGCCTGGCGCCACGGCCTCTTCCTCCCCCTCAATTCCGCTCCCTTTTCCTAACCTCACCGGCGGGTGCTCGTACTGCTACTGTCATGCCTAGAAGGGCGGCGGTCATCGTGTCGGCGGCGACGGCGGAGACGCCGAAGAAGAAGGGCGAATCGAAAGGGTTCGTGGAAGAGATGAGGTTCGTGGCGATGAGGCTGCACACGAGGGACCAGGCCAGGGAGGGCGAGAAGGAGGTCAAGCAGCCCGAGGAGAAAGCCGTTACCAAGTGGGACCCATCCGTCGAAGGGTACCTGAAATTTCTTGTGGACAGTAAGCTCGTTTATGACACGCTGGAGAAAATCGTTCAAGAGGCTCCTCATCCTTCTTATGCTGAATTCAGAAACACTGGATTGGAAAGGTCTGCAAGTTTGGCAGAAGATTTGGAGTGGTTCAAGGAGCAAGGTTATACCATTCCTGAACCTTCTTCTCCTGGTCTTACCTATGCACAATATCTTAAGGAGTTATCTGTGAAGGATCCCCAAGCATTCATTTGCCATTTTTACAATATCTACTTTGCTCATTCAGCTGGTGGTCGAATGATTGGGAAAAAGGTAACCAAACACATGCATGCTTAA
>Glyma04g19030.1 sequence type=predicted peptide gene model=Glyma04g19030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSLSTIALFLPQSLYIKPRLAPRPLPPPQFRSLFLTSPAGARTATVMPRRAAVIVSAATAETPKKKGESKGFVEEMRFVAMRLHTRDQAREGEKEVKQPEEKAVTKWDPSVEGYLKFLVDSKLVYDTLEKIVQEAPHPSYAEFRNTGLERSASLAEDLEWFKEQGYTIPEPSSPGLTYAQYLKELSVKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKLLNNKALEFYKWDDDLPRLLQNVRDKLNKVAEPWSREEKDHCLEETEKSFKLSGEILRLILS* >Glyma04g19030.2 sequence type=predicted peptide gene model=Glyma04g19030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSLSTIALFLPQSLYIKPRLAPRPLPPPQFRSLFLTSPAGARTATVMPRRAAVIVSAATAETPKKKGESKGFVEEMRFVAMRLHTRDQAREGEKEVKQPEEKAVTKWDPSVEGYLKFLVDSKLVYDTLEKIVQEAPHPSYAEFRNTGLERSASLAEDLEWFKEQGYTIPEPSSPGLTYAQYLKELSVKDPQAFICHFYNIYFAHSAGGRMIGKKVTKHMHA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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