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Report for Sequence Feature Glyma04g18590

Feature Type:gene_model
Chromosome:Gm04
Start:20221186
stop:20222839
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g18590
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G48670AT Annotation by Michelle Graham. TAIR10: XH/XS domain-containing protein | chr3:18031240-18033615 FORWARD LENGTH=647 SoyBaseE_val: 3.00E-63ISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR21596Panther RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED JGI ISS
PTHR21596:SF3Panther TRANSCRIPTION FACTOR X1-LIKE JGI ISS
PF03469PFAM XH domain JGI ISS
UniRef100_G7KBR6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor X1-like protein n=1 Tax=Medicago truncatula RepID=G7KBR6_MEDTR SoyBaseE_val: 1.00E-82ISS
UniRef100_I1MZC5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MZC5_SOYBN SoyBaseE_val: 1.00E-117ISS

Expression Patterns of Glyma04g18590
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g18590 not represented in the dataset
Glyma04g18590 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g18590 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g148500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g18590
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g18590
>Glyma04g18590.2   sequence type=transcript   gene model=Glyma04g18590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGAATTGCTTGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAAATGCATCGAAAAATACCTCTCTTCAGATGGCTGCTTTAGAGCAAATGAAAGCTGATGAAAATGTTATGAAACTGGCTGAAGATCAAAAGAGGCAAAAAGAACAACTCCATGCTAAAATCATTCAGCTTCAAAAACAAGTTGATATGAAACAAGAGCTGGAGTTGGAGATTCAGCAATTAAAAGGTTCATTAACTGTGCTGAAGCACATGGAAGATGACAAAGATGCAGAAATTCTGAATAAGGTAGATACACTACAAAAGAATTTAAGGGACAAGGAGCAGTCACTTCAAGACTTAGATGCATTGAACCAAACACTAATCATTAAAAAGCGTGAGAGTAATGATGAGTTGCAGGAAGCTCGACAAGCATTGGTTGATGCCATTAAAGAGTTACAATCTCATGGAAATATTCGTTTCAAGAGAATGGGGGAACTTGATACTAGACCATTCCTTGAAGCAATGAAGCAAAGATATAATGAGGAGGATGCTGAAGAGAGAGCTTCAGAACTGTGTTCATTGTGGAAAGAATATCTAAAGGACCCAGATTGGCATCCATTCAAAGTTATCATGGTTGAAGGAAAAGAAAAGGTGTGTCTATGTTAAACATATTTATAGGTCTCCTGAAATTATCCTGAAGTCTATGTGCTTCATTGCCTGTCACTCTTAATCAAACATGG
Coding sequences of Glyma04g18590
>Glyma04g18590.1   sequence type=CDS   gene model=Glyma04g18590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTTTAGAGCAAATGAAAGCTGATGAAAATGTTATGAAACTGGCTGAAGATCAAAAGAGGCAAAAAGAACAACTCCATGCTAAAATCATTCAGCTTCAAAAACAAGTTGATATGAAACAAGAGCTGGAGTTGGAGATTCAGCAATTAAAAGGTTCATTAACTGTGCTGAAGCACATGGAAGATGACAAAGATGCAGAAATTCTGAATAAGGTAGATACACTACAAAAGAATTTAAGGGACAAGGAGCAGTCACTTCAAGACTTAGATGCATTGAACCAAACACTAATCATTAAAAAGCGTGAGAGTAATGATGAGTTGCAGGAAGCTCGACAAGCATTGGTTGATGCCATTAAAGAGTTACAATCTCATGGAAATATTCGTTTCAAGAGAATGGGGGAACTTGATACTAGACCATTCCTTGAAGCAATGAAGCAAAGATATAATGAGGAGGATGCTGAAGAGAGAGCTTCAGAACTGTGTTCATTGTGGAAAGAATATCTAAAGGACCCAGATTGGCATCCATTCAAAGTTATCATGGTTGAAGGAAAAGAAAAGGTGTGTCTATGTTAA

>Glyma04g18590.2   sequence type=CDS   gene model=Glyma04g18590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTTTAGAGCAAATGAAAGCTGATGAAAATGTTATGAAACTGGCTGAAGATCAAAAGAGGCAAAAAGAACAACTCCATGCTAAAATCATTCAGCTTCAAAAACAAGTTGATATGAAACAAGAGCTGGAGTTGGAGATTCAGCAATTAAAAGGTTCATTAACTGTGCTGAAGCACATGGAAGATGACAAAGATGCAGAAATTCTGAATAAGGTAGATACACTACAAAAGAATTTAAGGGACAAGGAGCAGTCACTTCAAGACTTAGATGCATTGAACCAAACACTAATCATTAAAAAGCGTGAGAGTAATGATGAGTTGCAGGAAGCTCGACAAGCATTGGTTGATGCCATTAAAGAGTTACAATCTCATGGAAATATTCGTTTCAAGAGAATGGGGGAACTTGATACTAGACCATTCCTTGAAGCAATGAAGCAAAGATATAATGAGGAGGATGCTGAAGAGAGAGCTTCAGAACTGTGTTCATTGTGGAAAGAATATCTAAAGGACCCAGATTGGCATCCATTCAAAGTTATCATGGTTGAAGGAAAAGAAAAGGTGTGTCTATGTTAA
Predicted protein sequences of Glyma04g18590
>Glyma04g18590.1   sequence type=predicted peptide   gene model=Glyma04g18590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAALEQMKADENVMKLAEDQKRQKEQLHAKIIQLQKQVDMKQELELEIQQLKGSLTVLKHMEDDKDAEILNKVDTLQKNLRDKEQSLQDLDALNQTLIIKKRESNDELQEARQALVDAIKELQSHGNIRFKRMGELDTRPFLEAMKQRYNEEDAEERASELCSLWKEYLKDPDWHPFKVIMVEGKEKVCLC*

>Glyma04g18590.2   sequence type=predicted peptide   gene model=Glyma04g18590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAALEQMKADENVMKLAEDQKRQKEQLHAKIIQLQKQVDMKQELELEIQQLKGSLTVLKHMEDDKDAEILNKVDTLQKNLRDKEQSLQDLDALNQTLIIKKRESNDELQEARQALVDAIKELQSHGNIRFKRMGELDTRPFLEAMKQRYNEEDAEERASELCSLWKEYLKDPDWHPFKVIMVEGKEKVCLC*






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