SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G58340 | AT | Annotation by Michelle Graham. TAIR10: myb-like HTH transcriptional regulator family protein | chr5:23582607-23584245 FORWARD LENGTH=448 | SoyBase | E_val: 3.00E-23 | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| PTHR21717 | Panther | TELOMERIC REPEAT BINDING PROTEIN | JGI | ISS | |
| PF00249 | PFAM | Myb-like DNA-binding domain | JGI | ISS | |
| UniRef100_G7J8H5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Telomeric repeat-binding factor n=1 Tax=Medicago truncatula RepID=G7J8H5_MEDTR | SoyBase | E_val: 2.00E-56 | ISS |
| UniRef100_UPI000233A9A7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A9A7 related cluster n=1 Tax=unknown RepID=UPI000233A9A7 | SoyBase | E_val: 0 | ISS |
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Glyma04g18431 not represented in the dataset |
Glyma04g18431 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g148800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g18431.2 sequence type=transcript gene model=Glyma04g18431 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTACCAATCAAATCATAAAAAATAGTAGTACTATTGTAACGTTGTGACTTGTAGGGAGGGAAATGGAGGGAGGTGACGTTGGGCATTGGGTGTTGGAGTTCCTTCTCCGGGCTCGGTACCCAGTCGTTTCCAGTAACCTACTCAAGAAAGTCCTTCGAATAGTCCCACTTTCAGACTTTGATTCCAGGCTTCAGAAGACGCTTCTTCTCCGAACCCTTCAAGACCACTTGTTCGCTGTCTCTGTCCCCGAATCCGTTCTCGAAACCCTCGAGCTCCTCGAGGAACTTCACCGCCGCGACGACGGCGCTCTGATCACCGCCGCCGCCATGAGCGCCGCCTACTGCGCCATTGCGGTGGACTGCACTCTCAAGCACCTGCTGGTGGAACTCCACAACAACCCTGCCTACCTCGGCGCCGTGAACAGGATATGGCGTGGTAGGGTTCGGCACATGAGCGGTTCCAGGGAGGGCAGCCTTCTTCTCTCGCTGGAGTTGGAGCGGTGGAGAACCGACATCGAAACTTCCCTTCTGGACTCGTTGGTGAGGGAGAGGTTGGCCTCCATTGATACAAGAAGGGACGCCGTCGTCAAGCTCCGGGATTATTTGATGGAAGCATGGACCGATTTGGGCCCTTCGTTTCTCGAGCTAGCGGCGTTGGCGCAAATAAACAAAAATGCCCTAGCCGTGAATTACTTAGAGGATTCCCAACAGCCGGAGAGAGAAATTGAGAAGTGCACTGCTGCTCCTGCTGAGGAAGTGCATACCTCAACAGATGCCGAGGTCCAAAAGGTTGGGGAATGTGGATCTGTGGAGTTGCAAAAGTTGGCCGAGGATTCTCTACTTAATTCGTTGGAAGTGAATGAGGAGGCACCTATTGAAAGTAGAGATGCAGATGTACCTTGCCCACTTGTTATTAATAACAATAACAATGAGGCTGATCTGATGGAAAAAGATCAAACTTCTATCCCTCATAATCATGACCATAAGTCAAGTTTAATGGAAAGAAATAGTACCGCTCGCATTTATGAGTGGGACGATTCAATAGATGGCTTGGAGGATGGAACATCAGATCATGCAACTAGATTTAATTTGCCTAGCCCCAAGTGGAGAGAAGTTTCTCCATTGGATAAGTACAAACCTGCAAGCATTACAAAGAGGAGAAAAGTGAAAAAATGGAGTCAGTTGGAAGAGGAGACCCTAAAGACCGCTGTAGACAAGTTTGGCAGGGGAAATTGGAAGTTAATTCTAGATTCTCACAAGGATATATTTGAAGAGAGAACTGAAGTTGATTTAAAGGACAAGTGGAGAAACATGAGGTAATTTGGGTACAAATGAATCAGCATGTGTGGAATATTGCAGAGAGGGTGGTTGCTGCAGTTTGCAAGTCACTTTAGGTCAGCCTGTACGAGATGACGAGCTGGCTATGGCTAACTGGCTGTTTTTCTGGGTGCACGCTAGTTTTCATGCACCGTTGTTGAAGTCTGACTTGTGAGATTTCAGCCATATTTAAGGTTGCAAGTGGCCAAGGCACAATGGTAGGGTGTCACTAGAACTGGAGTCCCTTGGGGAGTTGATGTTAGGCATCAGTGCGCCTGCTGCAGCTTGTTTTCTTCTGACTTTGTTTCAAACTGTATTTTATTCTTGTTTTATGTCTTGGATTCTGCTTCTTTCACCTCTATTCTGCTTATGGGTGACATTTCTCTATTTCTTTCTAACTGTTGTTTCTTGTTTGTGGTTAGATATGCCTTGTTTTCCGTTTCCTTCATCAGTTTGCCACAACTTATCACTCTGGTGTCTTGGATTGTTTATATTCCTATTATATGTAATAGATTTCTTTGTCTTATCTAATCAAATACTTATGTACAGTGTGGGTGTGTATATAGATAGATGGATTGGATGGATGGAATGGCTTTTTGTTGATGAAGGGATAGATCGTGAGGATGTCTTTGTGCTTATGC >Glyma04g18431.3 sequence type=transcript gene model=Glyma04g18431 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTACCAATCAAATCATAAAAAATAGTAGTACTATTGTAACGTTGTGACTTGTAGGGAGGGAAATGGAGGGAGGTGACGTTGGGCATTGGGTGTTGGAGTTCCTTCTCCGGGCTCGGTACCCAGTCGTTTCCAGTAACCTACTCAAGAAAGTCCTTCGAATAGTCCCACTTTCAGACTTTGATTCCAGGCTTCAGAAGACGCTTCTTCTCCGAACCCTTCAAGACCACTTGTTCGCTGTCTCTGTCCCCGAATCCGTTCTCGAAACCCTCGAGCTCCTCGAGGAACTTCACCGCCGCGACGACGGCGCTCTGATCACCGCCGCCGCCATGAGCGCCGCCTACTGCGCCATTGCGGTGGACTGCACTCTCAAGCACCTGCTGGTGGAACTCCACAACAACCCTGCCTACCTCGGCGCCGTGAACAGGATATGGCGTGGTAGGGTTCGGCACATGAGCGGTTCCAGGGAGGGCAGCCTTCTTCTCTCGCTGGAGTTGGAGCGGTGGAGAACCGACATCGAAACTTCCCTTCTGGACTCGTTGGTGAGGGAGAGGTTGGCCTCCATTGATACAAGAAGGGACGCCGTCGTCAAGCTCCGGGATTATTTGATGGAAGCATGGACCGATTTGGGCCCTTCGTTTCTCGAGCTAGCGGCGTTGGCGCAAATAAACAAAAATGCCCTAGCCGTGAATTACTTAGAGGATTCCCAACAGCCGGAGAGAGAAATTGAGAAGTGCACTGCTGCTCCTGCTGAGGAAGTGCATACCTCAACAGATGCCGAGGTCCAAAAGGTTGGGGAATGTGGATCTGTGGAGTTGCAAAAGTTGGCCGAGGATTCTCTACTTAATTCGTTGGAAGTGAATGAGGAGGCACCTATTGAAAGTAGAGATGCAGATGTACCTTGCCCACTTGTTATTAATAACAATAACAATGAGGCTGATCTGATGGAAAAAGATCAAACTTCTATCCCTCATAATCATGACCATAAGTCAAGTTTAATGGAAAGAAATAGTACCGCTCGCATTTATGAGTGGGACGATTCAATAGATGGCTTGGAGGATGGAACATCAGATCATGCAACTAGATTTAATTTGCCTAGCCCCAAGTGGAGAGAAGTTTCTCCATTGGATAAGTACAAACCTGCAAGCATTACAAAGAGGAGAAAAGTGAAAAAATGGAGTCAGTTGGAAGAGGAGACCCTAAAGACCGCTGTAGACAAGTTTGGCAGGGGAAATTGGAAGTTAATTCTAGATTCTCACAAGGATATATTTGAAGAGAGAACTGAAGTTGATTTAAAGGACAAGTGGAGAAACATGAGGTAATTTGGGTACAAATGAATCAGCATGTGTGGAATATTGCAGAGAGGTATTTACTTGCATTATTTGTTGTTGTTGCTTGAGATTGTATAGACTGTTAAGCAATATGAACAGTGGAGGTTATGTATGATTAAACTGAAG
>Glyma04g18431.1 sequence type=CDS gene model=Glyma04g18431 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGGAGGTGACGTTGGGCATTGGGTGTTGGAGTTCCTTCTCCGGGCTCGGTACCCAGTCGTTTCCAGTAACCTACTCAAGAAAGTCCTTCGAATAGTCCCACTTTCAGACTTTGATTCCAGGCTTCAGAAGACGCTTCTTCTCCGAACCCTTCAAGACCACTTGTTCGCTGTCTCTGTCCCCGAATCCGTTCTCGAAACCCTCGAGCTCCTCGAGGAACTTCACCGCCGCGACGACGGCGCTCTGATCACCGCCGCCGCCATGAGCGCCGCCTACTGCGCCATTGCGGTGGACTGCACTCTCAAGCACCTGCTGGTGGAACTCCACAACAACCCTGCCTACCTCGGCGCCGTGAACAGGATATGGCGTGGTAGGGTTCGGCACATGAGCGGTTCCAGGGAGGGCAGCCTTCTTCTCTCGCTGGAGTTGGAGCGGTGGAGAACCGACATCGAAACTTCCCTTCTGGACTCGTTGGTGAGGGAGAGGTTGGCCTCCATTGATACAAGAAGGGACGCCGTCGTCAAGCTCCGGGATTATTTGATGGAAGCATGGACCGATTTGGGCCCTTCGTTTCTCGAGCTAGCGGCGTTGGCGCAAATAAACAAAAATGCCCTAGCCGTGAATTACTTAGAGGATTCCCAACAGCCGGAGAGAGAAATTGAGAAGTGCACTGCTGCTCCTGCTGAGGAAGTGCATACCTCAACAGATGCCGAGGTCCAAAAGGTTGGGGAATGTGGATCTGTGGAGTTGCAAAAGTTGGCCGAGGATTCTCTACTTAATTCGTTGGAAGTGAATGAGGAGGCACCTATTGAAAGTAGAGATGCAGATGTACCTTGCCCACTTGTTATTAATAACAATAACAATGAGGCTGATCTGATGGAAAAAGATCAAACTTCTATCCCTCATAATCATGACCATAAGTCAAGTTTAATGGAAAGAAATAGTACCGCTCGCATTTATGAGTGGGACGATTCAATAGATGGCTTGGAGGATGGAACATCAGATCATGCAACTAGATTTAATTTGCCTAGCCCCAAGTGGAGAGAAGTTTCTCCATTGGATAAGTACAAACCTGCAAGCATTACAAAGAGGAGAAAAGTGAAAAAATGGAGTCAGTTGGAAGAGGAGACCCTAAAGACCGCTGTAGACAAGTTTGGCAGGGGAAATTGGAAGTTAATTCTAGATTCTCACAAGGATATATTTGAAGAGAGAACTGAAGTTGATTTAAAGGACAAGTGGAGAAACATGAGGTAA >Glyma04g18431.2 sequence type=CDS gene model=Glyma04g18431 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGGAGGTGACGTTGGGCATTGGGTGTTGGAGTTCCTTCTCCGGGCTCGGTACCCAGTCGTTTCCAGTAACCTACTCAAGAAAGTCCTTCGAATAGTCCCACTTTCAGACTTTGATTCCAGGCTTCAGAAGACGCTTCTTCTCCGAACCCTTCAAGACCACTTGTTCGCTGTCTCTGTCCCCGAATCCGTTCTCGAAACCCTCGAGCTCCTCGAGGAACTTCACCGCCGCGACGACGGCGCTCTGATCACCGCCGCCGCCATGAGCGCCGCCTACTGCGCCATTGCGGTGGACTGCACTCTCAAGCACCTGCTGGTGGAACTCCACAACAACCCTGCCTACCTCGGCGCCGTGAACAGGATATGGCGTGGTAGGGTTCGGCACATGAGCGGTTCCAGGGAGGGCAGCCTTCTTCTCTCGCTGGAGTTGGAGCGGTGGAGAACCGACATCGAAACTTCCCTTCTGGACTCGTTGGTGAGGGAGAGGTTGGCCTCCATTGATACAAGAAGGGACGCCGTCGTCAAGCTCCGGGATTATTTGATGGAAGCATGGACCGATTTGGGCCCTTCGTTTCTCGAGCTAGCGGCGTTGGCGCAAATAAACAAAAATGCCCTAGCCGTGAATTACTTAGAGGATTCCCAACAGCCGGAGAGAGAAATTGAGAAGTGCACTGCTGCTCCTGCTGAGGAAGTGCATACCTCAACAGATGCCGAGGTCCAAAAGGTTGGGGAATGTGGATCTGTGGAGTTGCAAAAGTTGGCCGAGGATTCTCTACTTAATTCGTTGGAAGTGAATGAGGAGGCACCTATTGAAAGTAGAGATGCAGATGTACCTTGCCCACTTGTTATTAATAACAATAACAATGAGGCTGATCTGATGGAAAAAGATCAAACTTCTATCCCTCATAATCATGACCATAAGTCAAGTTTAATGGAAAGAAATAGTACCGCTCGCATTTATGAGTGGGACGATTCAATAGATGGCTTGGAGGATGGAACATCAGATCATGCAACTAGATTTAATTTGCCTAGCCCCAAGTGGAGAGAAGTTTCTCCATTGGATAAGTACAAACCTGCAAGCATTACAAAGAGGAGAAAAGTGAAAAAATGGAGTCAGTTGGAAGAGGAGACCCTAAAGACCGCTGTAGACAAGTTTGGCAGGGGAAATTGGAAGTTAATTCTAGATTCTCACAAGGATATATTTGAAGAGAGAACTGAAGTTGATTTAAAGGACAAGTGGAGAAACATGAGGTAA >Glyma04g18431.3 sequence type=CDS gene model=Glyma04g18431 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGGAGGTGACGTTGGGCATTGGGTGTTGGAGTTCCTTCTCCGGGCTCGGTACCCAGTCGTTTCCAGTAACCTACTCAAGAAAGTCCTTCGAATAGTCCCACTTTCAGACTTTGATTCCAGGCTTCAGAAGACGCTTCTTCTCCGAACCCTTCAAGACCACTTGTTCGCTGTCTCTGTCCCCGAATCCGTTCTCGAAACCCTCGAGCTCCTCGAGGAACTTCACCGCCGCGACGACGGCGCTCTGATCACCGCCGCCGCCATGAGCGCCGCCTACTGCGCCATTGCGGTGGACTGCACTCTCAAGCACCTGCTGGTGGAACTCCACAACAACCCTGCCTACCTCGGCGCCGTGAACAGGATATGGCGTGGTAGGGTTCGGCACATGAGCGGTTCCAGGGAGGGCAGCCTTCTTCTCTCGCTGGAGTTGGAGCGGTGGAGAACCGACATCGAAACTTCCCTTCTGGACTCGTTGGTGAGGGAGAGGTTGGCCTCCATTGATACAAGAAGGGACGCCGTCGTCAAGCTCCGGGATTATTTGATGGAAGCATGGACCGATTTGGGCCCTTCGTTTCTCGAGCTAGCGGCGTTGGCGCAAATAAACAAAAATGCCCTAGCCGTGAATTACTTAGAGGATTCCCAACAGCCGGAGAGAGAAATTGAGAAGTGCACTGCTGCTCCTGCTGAGGAAGTGCATACCTCAACAGATGCCGAGGTCCAAAAGGTTGGGGAATGTGGATCTGTGGAGTTGCAAAAGTTGGCCGAGGATTCTCTACTTAATTCGTTGGAAGTGAATGAGGAGGCACCTATTGAAAGTAGAGATGCAGATGTACCTTGCCCACTTGTTATTAATAACAATAACAATGAGGCTGATCTGATGGAAAAAGATCAAACTTCTATCCCTCATAATCATGACCATAAGTCAAGTTTAATGGAAAGAAATAGTACCGCTCGCATTTATGAGTGGGACGATTCAATAGATGGCTTGGAGGATGGAACATCAGATCATGCAACTAGATTTAATTTGCCTAGCCCCAAGTGGAGAGAAGTTTCTCCATTGGATAAGTACAAACCTGCAAGCATTACAAAGAGGAGAAAAGTGAAAAAATGGAGTCAGTTGGAAGAGGAGACCCTAAAGACCGCTGTAGACAAGTTTGGCAGGGGAAATTGGAAGTTAATTCTAGATTCTCACAAGGATATATTTGAAGAGAGAACTGAAGTTGATTTAAAGGACAAGTGGAGAAACATGAGGTAA
>Glyma04g18431.1 sequence type=predicted peptide gene model=Glyma04g18431 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGGDVGHWVLEFLLRARYPVVSSNLLKKVLRIVPLSDFDSRLQKTLLLRTLQDHLFAVSVPESVLETLELLEELHRRDDGALITAAAMSAAYCAIAVDCTLKHLLVELHNNPAYLGAVNRIWRGRVRHMSGSREGSLLLSLELERWRTDIETSLLDSLVRERLASIDTRRDAVVKLRDYLMEAWTDLGPSFLELAALAQINKNALAVNYLEDSQQPEREIEKCTAAPAEEVHTSTDAEVQKVGECGSVELQKLAEDSLLNSLEVNEEAPIESRDADVPCPLVINNNNNEADLMEKDQTSIPHNHDHKSSLMERNSTARIYEWDDSIDGLEDGTSDHATRFNLPSPKWREVSPLDKYKPASITKRRKVKKWSQLEEETLKTAVDKFGRGNWKLILDSHKDIFEERTEVDLKDKWRNMR* >Glyma04g18431.2 sequence type=predicted peptide gene model=Glyma04g18431 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGGDVGHWVLEFLLRARYPVVSSNLLKKVLRIVPLSDFDSRLQKTLLLRTLQDHLFAVSVPESVLETLELLEELHRRDDGALITAAAMSAAYCAIAVDCTLKHLLVELHNNPAYLGAVNRIWRGRVRHMSGSREGSLLLSLELERWRTDIETSLLDSLVRERLASIDTRRDAVVKLRDYLMEAWTDLGPSFLELAALAQINKNALAVNYLEDSQQPEREIEKCTAAPAEEVHTSTDAEVQKVGECGSVELQKLAEDSLLNSLEVNEEAPIESRDADVPCPLVINNNNNEADLMEKDQTSIPHNHDHKSSLMERNSTARIYEWDDSIDGLEDGTSDHATRFNLPSPKWREVSPLDKYKPASITKRRKVKKWSQLEEETLKTAVDKFGRGNWKLILDSHKDIFEERTEVDLKDKWRNMR* >Glyma04g18431.3 sequence type=predicted peptide gene model=Glyma04g18431 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGGDVGHWVLEFLLRARYPVVSSNLLKKVLRIVPLSDFDSRLQKTLLLRTLQDHLFAVSVPESVLETLELLEELHRRDDGALITAAAMSAAYCAIAVDCTLKHLLVELHNNPAYLGAVNRIWRGRVRHMSGSREGSLLLSLELERWRTDIETSLLDSLVRERLASIDTRRDAVVKLRDYLMEAWTDLGPSFLELAALAQINKNALAVNYLEDSQQPEREIEKCTAAPAEEVHTSTDAEVQKVGECGSVELQKLAEDSLLNSLEVNEEAPIESRDADVPCPLVINNNNNEADLMEKDQTSIPHNHDHKSSLMERNSTARIYEWDDSIDGLEDGTSDHATRFNLPSPKWREVSPLDKYKPASITKRRKVKKWSQLEEETLKTAVDKFGRGNWKLILDSHKDIFEERTEVDLKDKWRNMR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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