Glyma04g17885 - SoyBase

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Report for Sequence Feature Glyma04g17885

Feature Type:	gene_model
Chromosome:	Gm04
Start:	19260762
stop:	19266021
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g17885

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G12330	AT	Annotation by Michelle Graham. TAIR10: Lateral root primordium (LRP) protein-related \| chr5:3987677-3989074 REVERSE LENGTH=320	SoyBase	E_val: 1.00E-53	ISS
GO:0007155	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell adhesion	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
PF05142	PFAM	Domain of unknown function (DUF702)	JGI		ISS
UniRef100_G7J0K6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Short internodes n=1 Tax=Medicago truncatula RepID=G7J0K6_MEDTR	SoyBase	E_val: 2.00E-147	ISS
UniRef100_I1LLD9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LLD9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g17885

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g17885 not represented in the dataset	Glyma04g17885 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g17885 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g136700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g17885

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g17885

Limit To All Plant Sequences

>Glyma04g17885.2   sequence type=transcript   gene model=Glyma04g17885   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGAAACTCATGTTCTGTTCCAATTACTATCCATATAATAAGATAATATCTCCTTCCACAACATTCAACAAGAGCTAGCTCCGCAAGATAAAGAAAGGTCTTAGAATACTTGCAAACACACAAACACAAAACACCCTTTTTCCAAGAACAAGAGCAAGAGCCTCAACCTCAGAGCTGTGATAACTTGTTCCAATGAGCATGTTAGGCCTGAGAGACCTAGTTCTCATAGCTCAAACCCCTTCTTCCCTTCACCACCAACACCAAGGCCAACCCATTTCAGAAAACCAGACTCACACTCACACTCCAAACCTTCCTTTGCCTTCTTCAGCAGCTTCTCTCAGTGTTGGCTTTGGAATTTTCCCTCTCCTCACTGCCACACCATGTGTGCCACAGCCTCATCAAAACAATGAGGTTCAAGAGTGTGGTGGTGGTGGTGCCAATAGTAACACTACCACCACCAATTATTGGAACCTCAAGATGTGCCAAGAAGTGAATAATCCTCCAAAGAAGGGTGTGATCAACGTGGCTGATCATGATGATGAGAAGGGTGTGATGGAGAGTGAGGAAAACGGGGTCTATGGGCCTGACTTTAGGGTGTGCCAAGATTGTGGCAACAGGGCTAAGAAAGATTGCGTCTTTAGAAGATGCAGGACTTGCTGCAAGGGACGTGGGTATGATTGTAACACTCACGTGAAGAGCACGTGGATCCCCTCCGTTCGCCGCCGCGAGCGCGAGATCACGGTGGCTTCCGGTGGCGGTGTTGGCGGCAATGGTGGTTGTAAGAGGCCAAGAGCTGTGGTGGGGTCATCTCAAAATGCCACTTCTCATAGTTCCAACTCTAATGCTACAACTCCTAAGAGCTTAGCTACTAGCTCTTTTCATCAAGATGCTAGCTTCAAGCAGTCTTTACCGGGTCATGTTCGTGCACCAGCAGTGTTCAAGTGCCATAGAGTCTCTGCCATTGGGAATGGTGAAGATGAGTTTGCATACTTGGCAACGGTCCAGATTAGTGGGCATGTGTTCAAAGGGTTTCTCTATGACCATGGTGTTGATGGGAAAACCGCAAATGTAGTCCCTTGTGTCTCGGAACTGCAGCTGGGAAACAATTGCAGTGGGAAGAACAGAGAATGTTCCTCTGCAATTGCAATTGGGGTTGCAAATAACAATGCATACCCTGCTTCTGCGAGTTGAAGATTGCTTTAGAGATGGAAAGATTTCACCACAGAGAACAAATTGTTTTAGAATCCCATGTTGCACCTCAAATTATTGAAAGAGGTAGAGGGCTATGTACCCACAAGGCCACGACGAGGACTGGCCAAATGGTGAGT

>Glyma04g17885.3   sequence type=transcript   gene model=Glyma04g17885   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGAAACTCATGTTCTGTTCCAATTACTATCCATATAATAAGATAATATCTCCTTCCACAACATTCAACAAGAGCTAGCTCCGCAAGATAAAGAAAGGTCTTAGAATACTTGCAAACACACAAACACAAAACACCCTTTTTCCAAGAACAAGAGCAAGAGCCTCAACCTCAGAGCTGTGATAACTTGTTCCAATGAGCATGTTAGGCCTGAGAGACCTAGTTCTCATAGCTCAAACCCCTTCTTCCCTTCACCACCAACACCAAGGCCAACCCATTTCAGAAAACCAGACTCACACTCACACTCCAAACCTTCCTTTGCCTTCTTCAGCAGCTTCTCTCAGTGTTGGCTTTGGAATTTTCCCTCTCCTCACTGCCACACCATGTGTGCCACAGCCTCATCAAAACAATGAGGTTCAAGAGTGTGGTGGTGGTGGTGCCAATAGTAACACTACCACCACCAATTATTGGAACCTCAAGATGTGCCAAGAAGTGAATAATCCTCCAAAGAAGGGTGTGATCAACGTGGCTGATCATGATGATGAGAAGGGTGTGATGGAGAGTGAGGAAAACGGGGTCTATGGGCCTGACTTTAGGGTGTGCCAAGATTGTGGCAACAGGGCTAAGAAAGATTGCGTCTTTAGAAGATGCAGGACTTGCTGCAAGGGACGTGGGTATGATTGTAACACTCACGTGAAGAGCACGTGGATCCCCTCCGTTCGCCGCCGCGAGCGCGAGATCACGGTGGCTTCCGGTGGCGGTGTTGGCGGCAATGGTGGTTGTAAGAGGCCAAGAGCTGTGGTGGGGTCATCTCAAAATGCCACTTCTCATAGTTCCAACTCTAATGCTACAACTCCTAAGAGCTTAGCTACTAGCTCTTTTCATCAAGATGCTAGCTTCAAGCAGTCTTTACCGGGTCATGTTCGTGCACCAGCAGTGTTCAAGTGCCATAGAGTCTCTGCCATTGGGAATGGTGAAGATGAGTTTGCATACTTGGCAACGGTCCAGATTAGTGGGCATGTGTTCAAAGGGTTTCTCTATGACCATGGTGTTGATGGGAAAACCGCAAATGTAGTCCCTTGTGTCTCGGAACTGCAGCTGGGAAACAATTGCAGTGGGAAGAACAGAGAATGTTCCTCTGCAATTGCAATTGGGGTTGCAAATAACAATGCATACCCTGCTTCTGCGAGTTGAAGATTGCTTTAGAGGTACTAAATTGGACTCAGCTTAATTCAAAATAACTAGGGACCAGATTCCTATTTCTAAGCAAACTTATAAGATAGTAAAAGGGAAAATATTTTTTATTGAAATATGAAAAAGTTTCTTATTCTGTTATTTTAAAATGTGTTTTCATATGATTTTTTGATAAAATATTTTTTAGAATAATAGTTAGTAAGATTCTTACTTGTATTATTGAAAGAAG

Coding sequences of Glyma04g17885

Limit To All Plant Sequences

>Glyma04g17885.1   sequence type=CDS   gene model=Glyma04g17885   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATGTTAGGCCTGAGAGACCTAGTTCTCATAGCTCAAACCCCTTCTTCCCTTCACCACCAACACCAAGGCCAACCCATTTCAGAAAACCAGACTCACACTCACACTCCAAACCTTCCTTTGCCTTCTTCAGCAGCTTCTCTCAGTGTTGGCTTTGGAATTTTCCCTCTCCTCACTGCCACACCATGTGTGCCACAGCCTCATCAAAACAATGAGGTTCAAGAGTGTGGTGGTGGTGGTGCCAATAGTAACACTACCACCACCAATTATTGGAACCTCAAGATGTGCCAAGAAGTGAATAATCCTCCAAAGAAGGGTGTGATCAACGTGGCTGATCATGATGATGAGAAGGGTGTGATGGAGAGTGAGGAAAACGGGGTCTATGGGCCTGACTTTAGGGTGTGCCAAGATTGTGGCAACAGGGCTAAGAAAGATTGCGTCTTTAGAAGATGCAGGACTTGCTGCAAGGGACGTGGGTATGATTGTAACACTCACGTGAAGAGCACGTGGATCCCCTCCGTTCGCCGCCGCGAGCGCGAGATCACGGTGGCTTCCGGTGGCGGTGTTGGCGGCAATGGTGGTTGTAAGAGGCCAAGAGCTGTGGTGGGGTCATCTCAAAATGCCACTTCTCATAGTTCCAACTCTAATGCTACAACTCCTAAGAGCTTAGCTACTAGCTCTTTTCATCAAGATGCTAGCTTCAAGCAGTCTTTACCGGGTCATGTTCGTGCACCAGCAGTGTTCAAGTGCCATAGAGTCTCTGCCATTGGGAATGGTGAAGATGAGTTTGCATACTTGGCAACGGTCCAGATTAGTGGGCATGTGTTCAAAGGGTTTCTCTATGACCATGGTGTTGATGGGAAAACCGCAAATGTAGTCCCTTGTGTCTCGGAACTGCAGCTGGGAAACAATTGCAGTGGGAAGAACAGAGAATGTTCCTCTGCAATTGCAATTGGGGTTGCAAATAACAATGCATACCCTGCTTCTGCGAGTTGA

>Glyma04g17885.2   sequence type=CDS   gene model=Glyma04g17885   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATGTTAGGCCTGAGAGACCTAGTTCTCATAGCTCAAACCCCTTCTTCCCTTCACCACCAACACCAAGGCCAACCCATTTCAGAAAACCAGACTCACACTCACACTCCAAACCTTCCTTTGCCTTCTTCAGCAGCTTCTCTCAGTGTTGGCTTTGGAATTTTCCCTCTCCTCACTGCCACACCATGTGTGCCACAGCCTCATCAAAACAATGAGGTTCAAGAGTGTGGTGGTGGTGGTGCCAATAGTAACACTACCACCACCAATTATTGGAACCTCAAGATGTGCCAAGAAGTGAATAATCCTCCAAAGAAGGGTGTGATCAACGTGGCTGATCATGATGATGAGAAGGGTGTGATGGAGAGTGAGGAAAACGGGGTCTATGGGCCTGACTTTAGGGTGTGCCAAGATTGTGGCAACAGGGCTAAGAAAGATTGCGTCTTTAGAAGATGCAGGACTTGCTGCAAGGGACGTGGGTATGATTGTAACACTCACGTGAAGAGCACGTGGATCCCCTCCGTTCGCCGCCGCGAGCGCGAGATCACGGTGGCTTCCGGTGGCGGTGTTGGCGGCAATGGTGGTTGTAAGAGGCCAAGAGCTGTGGTGGGGTCATCTCAAAATGCCACTTCTCATAGTTCCAACTCTAATGCTACAACTCCTAAGAGCTTAGCTACTAGCTCTTTTCATCAAGATGCTAGCTTCAAGCAGTCTTTACCGGGTCATGTTCGTGCACCAGCAGTGTTCAAGTGCCATAGAGTCTCTGCCATTGGGAATGGTGAAGATGAGTTTGCATACTTGGCAACGGTCCAGATTAGTGGGCATGTGTTCAAAGGGTTTCTCTATGACCATGGTGTTGATGGGAAAACCGCAAATGTAGTCCCTTGTGTCTCGGAACTGCAGCTGGGAAACAATTGCAGTGGGAAGAACAGAGAATGTTCCTCTGCAATTGCAATTGGGGTTGCAAATAACAATGCATACCCTGCTTCTGCGAGTTGA

>Glyma04g17885.3   sequence type=CDS   gene model=Glyma04g17885   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATGTTAGGCCTGAGAGACCTAGTTCTCATAGCTCAAACCCCTTCTTCCCTTCACCACCAACACCAAGGCCAACCCATTTCAGAAAACCAGACTCACACTCACACTCCAAACCTTCCTTTGCCTTCTTCAGCAGCTTCTCTCAGTGTTGGCTTTGGAATTTTCCCTCTCCTCACTGCCACACCATGTGTGCCACAGCCTCATCAAAACAATGAGGTTCAAGAGTGTGGTGGTGGTGGTGCCAATAGTAACACTACCACCACCAATTATTGGAACCTCAAGATGTGCCAAGAAGTGAATAATCCTCCAAAGAAGGGTGTGATCAACGTGGCTGATCATGATGATGAGAAGGGTGTGATGGAGAGTGAGGAAAACGGGGTCTATGGGCCTGACTTTAGGGTGTGCCAAGATTGTGGCAACAGGGCTAAGAAAGATTGCGTCTTTAGAAGATGCAGGACTTGCTGCAAGGGACGTGGGTATGATTGTAACACTCACGTGAAGAGCACGTGGATCCCCTCCGTTCGCCGCCGCGAGCGCGAGATCACGGTGGCTTCCGGTGGCGGTGTTGGCGGCAATGGTGGTTGTAAGAGGCCAAGAGCTGTGGTGGGGTCATCTCAAAATGCCACTTCTCATAGTTCCAACTCTAATGCTACAACTCCTAAGAGCTTAGCTACTAGCTCTTTTCATCAAGATGCTAGCTTCAAGCAGTCTTTACCGGGTCATGTTCGTGCACCAGCAGTGTTCAAGTGCCATAGAGTCTCTGCCATTGGGAATGGTGAAGATGAGTTTGCATACTTGGCAACGGTCCAGATTAGTGGGCATGTGTTCAAAGGGTTTCTCTATGACCATGGTGTTGATGGGAAAACCGCAAATGTAGTCCCTTGTGTCTCGGAACTGCAGCTGGGAAACAATTGCAGTGGGAAGAACAGAGAATGTTCCTCTGCAATTGCAATTGGGGTTGCAAATAACAATGCATACCCTGCTTCTGCGAGTTGA

Predicted protein sequences of Glyma04g17885

Limit To All Plant Sequences

>Glyma04g17885.1   sequence type=predicted peptide   gene model=Glyma04g17885   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMLGLRDLVLIAQTPSSLHHQHQGQPISENQTHTHTPNLPLPSSAASLSVGFGIFPLLTATPCVPQPHQNNEVQECGGGGANSNTTTTNYWNLKMCQEVNNPPKKGVINVADHDDEKGVMESEENGVYGPDFRVCQDCGNRAKKDCVFRRCRTCCKGRGYDCNTHVKSTWIPSVRRREREITVASGGGVGGNGGCKRPRAVVGSSQNATSHSSNSNATTPKSLATSSFHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVQISGHVFKGFLYDHGVDGKTANVVPCVSELQLGNNCSGKNRECSSAIAIGVANNNAYPASAS*

>Glyma04g17885.2   sequence type=predicted peptide   gene model=Glyma04g17885   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMLGLRDLVLIAQTPSSLHHQHQGQPISENQTHTHTPNLPLPSSAASLSVGFGIFPLLTATPCVPQPHQNNEVQECGGGGANSNTTTTNYWNLKMCQEVNNPPKKGVINVADHDDEKGVMESEENGVYGPDFRVCQDCGNRAKKDCVFRRCRTCCKGRGYDCNTHVKSTWIPSVRRREREITVASGGGVGGNGGCKRPRAVVGSSQNATSHSSNSNATTPKSLATSSFHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVQISGHVFKGFLYDHGVDGKTANVVPCVSELQLGNNCSGKNRECSSAIAIGVANNNAYPASAS*

>Glyma04g17885.3   sequence type=predicted peptide   gene model=Glyma04g17885   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMLGLRDLVLIAQTPSSLHHQHQGQPISENQTHTHTPNLPLPSSAASLSVGFGIFPLLTATPCVPQPHQNNEVQECGGGGANSNTTTTNYWNLKMCQEVNNPPKKGVINVADHDDEKGVMESEENGVYGPDFRVCQDCGNRAKKDCVFRRCRTCCKGRGYDCNTHVKSTWIPSVRRREREITVASGGGVGGNGGCKRPRAVVGSSQNATSHSSNSNATTPKSLATSSFHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVQISGHVFKGFLYDHGVDGKTANVVPCVSELQLGNNCSGKNRECSSAIAIGVANNNAYPASAS*

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