Glyma04g17700 - SoyBase

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Report for Sequence Feature Glyma04g17700

Feature Type:	gene_model
Chromosome:	Gm04
Start:	19212439
stop:	19212661
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g17700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G78340	AT	Annotation by Michelle Graham. TAIR10: glutathione S-transferase TAU 22 \| chr1:29473046-29473797 REVERSE LENGTH=218	SoyBase	E_val: 4.00E-15	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004364	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity	SoyBase	N/A	ISS
PTHR11260	Panther	GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING	JGI		ISS
PTHR11260:SF54	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00043	PFAM	Glutathione S-transferase, C-terminal domain	JGI		ISS
UniRef100_I1KMG9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KMG9_SOYBN	SoyBase	E_val: 1.00E-27	ISS
UniRef100_O49235	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 2,4-D inducible glutathione S-transferase n=1 Tax=Glycine max RepID=O49235_SOYBN	SoyBase	E_val: 1.00E-21	ISS

Expression Patterns of Glyma04g17700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g17700 not represented in the dataset	Glyma04g17700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g17700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma04g17700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g17700

Limit To All Plant Sequences

>Glyma04g17700.1   sequence type=CDS   gene model=Glyma04g17700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATATGATCTTGGAAAGAAGGTTTGGACATCAAAGGGAGAAGAAAAAGAAGCTGCCAAGAAGGAGTTCATAGAGGCCCTTAAATTGTTGGAGGAACAGCTGGGAGATAAGACTTATTTTGGAGGAGACAATATTGGCACTCATTATTTATTTAGCAAGCATCATACGAAGTTAACAAATTGA

Predicted protein sequences of Glyma04g17700

Limit To All Plant Sequences

>Glyma04g17700.1   sequence type=predicted peptide   gene model=Glyma04g17700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IYDLGKKVWTSKGEEKEAAKKEFIEALKLLEEQLGDKTYFGGDNIGTHYLFSKHHTKLTN*

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