Glyma04g17670 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g17670

Feature Type:	gene_model
Chromosome:	Gm04
Start:	19179549
stop:	19181202
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g17670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29040	AT	Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719); Has 344 Blast hits to 344 proteins in 122 species: Archae - 2; Bacteria - 227; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink). \| chr1:10134120-10135180 FORWARD LENGTH=198	SoyBase	E_val: 1.00E-56	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PF09585	PFAM	Conserved hypothetical protein (Lin0512 fam)	JGI		ISS
UniRef100_I1JW48	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JW48_SOYBN	SoyBase	E_val: 5.00E-82	ISS
UniRef100_UPI0002627835	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: hypothetical protein LGrbi_08551 n=1 Tax=Lentibacillus sp. Grbi RepID=UPI0002627835	SoyBase	E_val: 5.00E-24	ISS

Expression Patterns of Glyma04g17670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g17670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g136400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g17670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g17670

Limit To All Plant Sequences

>Glyma04g17670.3   sequence type=transcript   gene model=Glyma04g17670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCACCACTCTCCAATCTTCCATTCTCCCCTCTTTTCTCCAACTCAACGCAACCGTGACAATTGCGCCGAATTTCTCAACCTTCACTTCGCTTGAGACCAGACCCCTGCTTTGCATTGAAGGGAAGCTCATTACAAGATATGAAGCTTTTGTTTGTTGAAATGGGTGTTGGCTATGACCTTCATGGTCAGGACATGACAACTGCCGCAATGAGACCATGCAGAGATGCAATTTCTGCCAATTCAATTCCAGCTTTCCGTAAAGGTAACATCCCTCGTGTTACATCTGATCACATGAAATTGCATGTCAAACTGGGGGTGCCTCATCCTCTGCAACAAAATTTGGACAAGGATAAAATTAGGTATGTGTTTCCATACGGACAAATCATGAACTTTGAAGTAGTGGATGGTGGACTTGTGTGCTCAACTGAAGAAATCCCCGAAAAGAACGATGACTGCTACATTGTTAATGCTGCTGTATACGTTGGCTACTAGGCTTTTGTCAGGACATAACAGCTGCCGCAATGAGACTGTCG

Coding sequences of Glyma04g17670

Limit To All Plant Sequences

>Glyma04g17670.2   sequence type=CDS   gene model=Glyma04g17670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCTTTTGTTTGTTGAAATGGGTGTTGGCTATGACCTTCATGGTCAGGACATGACAACTGCCGCAATGAGACCATGCAGAGATGCAATTTCTGCCAATTCAATTCCAGCTTTCCGTAAAGGTAACATCCCTCGTGTTACATCTGATCACATGAAATTGCATGTCAAACTGGGGGTGCCTCATCCTCTGCAACAAAATTTGGACAAGGATAAAATTAGGTATGTGTTTCCATACGGACAAATCATGAACTTTGAAGTAGTGGATGGTGGACTTGTGTGCTCAACTGAAGAAATCCCCGAAAAGAACGATGACTGCTACATTGTTAATGCTGCTGTATACGTTGGCTACTAG

>Glyma04g17670.3   sequence type=CDS   gene model=Glyma04g17670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCTTTTGTTTGTTGAAATGGGTGTTGGCTATGACCTTCATGGTCAGGACATGACAACTGCCGCAATGAGACCATGCAGAGATGCAATTTCTGCCAATTCAATTCCAGCTTTCCGTAAAGGTAACATCCCTCGTGTTACATCTGATCACATGAAATTGCATGTCAAACTGGGGGTGCCTCATCCTCTGCAACAAAATTTGGACAAGGATAAAATTAGGTATGTGTTTCCATACGGACAAATCATGAACTTTGAAGTAGTGGATGGTGGACTTGTGTGCTCAACTGAAGAAATCCCCGAAAAGAACGATGACTGCTACATTGTTAATGCTGCTGTATACGTTGGCTACTAG

Predicted protein sequences of Glyma04g17670

Limit To All Plant Sequences

>Glyma04g17670.2   sequence type=predicted peptide   gene model=Glyma04g17670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLLFVEMGVGYDLHGQDMTTAAMRPCRDAISANSIPAFRKGNIPRVTSDHMKLHVKLGVPHPLQQNLDKDKIRYVFPYGQIMNFEVVDGGLVCSTEEIPEKNDDCYIVNAAVYVGY*

>Glyma04g17670.3   sequence type=predicted peptide   gene model=Glyma04g17670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLLFVEMGVGYDLHGQDMTTAAMRPCRDAISANSIPAFRKGNIPRVTSDHMKLHVKLGVPHPLQQNLDKDKIRYVFPYGQIMNFEVVDGGLVCSTEEIPEKNDDCYIVNAAVYVGY*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain