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Report for Sequence Feature Glyma04g17650

Feature Type:gene_model
Chromosome:Gm04
Start:19156862
stop:19157948
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g17650
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G50770AT Annotation by Michelle Graham. TAIR10: calmodulin-like 41 | chr3:18873987-18874604 FORWARD LENGTH=205 SoyBaseE_val: 6.00E-32ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0043090GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid import SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
KOG0027 KOG Calmodulin and related proteins (EF-Hand superfamily) JGI ISS
PTHR10891Panther CALMODULIN JGI ISS
PTHR10891:SF39Panther EF-HAND CALCIUM BINDING PROTEIN JGI ISS
PF00036PFAM EF hand JGI ISS
UniRef100_G7J5J1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin-like protein n=2 Tax=Medicago truncatula RepID=G7J5J1_MEDTR SoyBaseE_val: 3.00E-58ISS
UniRef100_I1JW46UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JW46_SOYBN SoyBaseE_val: 2.00E-94ISS

Expression Patterns of Glyma04g17650
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g17650 not represented in the dataset
Glyma04g17650 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g17650 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g136200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g17650
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g17650
>Glyma04g17650.1   sequence type=CDS   gene model=Glyma04g17650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGTGAACACAGAGTTTGAGCGTGTTCTTAAGTATTTTGATGAGGATGGGGATGGTAAGATTTCCCCATCTGAGCTCAGGAACCGGCTAGGCATGATGGGTGGTGTGTTATTGTTCAAAGACGCTGAAAAGTTGATTGAGGAATTGGATTCTGACGGTGATGGGTTTTTGAGTTTGGAAGATTTTGTGAAGATAATGGAGGCAGCAGGGGAAGAAGAGAAGTTGAAGGATTTGGCAGAGGCTTTTGAGATGTACCATGACTCTGAAATGTTTGGGTTTATAACACCCAAAAGCTTGCAAAAGATGCTAGGTAGGTTAGGAGAATCAAAATCCATGGAGCAATGCACAGCTATGATTGGCCACTTTGATTTGAATGGAGATGGCCTGCTTAGCTTTGATGAATTTAGAGTCATGATGCAGTGA
Predicted protein sequences of Glyma04g17650
>Glyma04g17650.1   sequence type=predicted peptide   gene model=Glyma04g17650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRVNTEFERVLKYFDEDGDGKISPSELRNRLGMMGGVLLFKDAEKLIEELDSDGDGFLSLEDFVKIMEAAGEEEKLKDLAEAFEMYHDSEMFGFITPKSLQKMLGRLGESKSMEQCTAMIGHFDLNGDGLLSFDEFRVMMQ*






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