SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G54390 | AT | Annotation by Michelle Graham. TAIR10: sequence-specific DNA binding transcription factors | chr3:20137912-20138863 REVERSE LENGTH=296 | SoyBase | E_val: 3.00E-101 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| KOG4282 | KOG | Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain | JGI | ISS | |
| UniRef100_D7LUT4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LUT4_ARALL | SoyBase | E_val: 4.00E-98 | ISS |
| UniRef100_I1LLG2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LLG2_SOYBN | SoyBase | E_val: 9.00E-173 | ISS |
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Glyma04g17330 not represented in the dataset |
Glyma04g17330 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g135400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g17330.3 sequence type=transcript gene model=Glyma04g17330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGAGCACCACCTCTTACACAAAAAGCAAGAAGAAAAAGAAAAATTCAAGGCATTGACATCATTAACTCATTTGACAAAAGTGATCATTTTTCCCCCTTTCCACCACCCACTATTGATATTTTCCATTTCTTTTTTCTTTTTTAACTTTCTTTCTAATGCTAGTGGTTGTCTCCCTCTTGTTTACCTTTTCTTATTCATAAACTCACATTGAAACTTTGAAGCATGTTAGCAGCTAAACACTTCAAAGGGTAGTTAAAAACTTTGTAGTTCATGGGGATGAGAAATGGAGGATAATAATAATAATAATAACAAAGCAGAGAAGCAGCAAGATGATAGTAGCCACCACCCATCTCTCCTCCTTCCTAAACCTAATCATAGCACCATCAACAACATCAAGGAGGATCATCATCAGTCTCCAAGAAAATTAGCCATTGGTGGTGGTGGCGGTGGCAGTGGTGATAGGCTGAAGAGAGATGAGTGGAGTGAAGGAGCTGTGACAACCCTTCTTGAGGCCTATGAGGCCAAATGGGTGCACAGAAACAGAGCCAAACTCAAAGGCCATGACTGGGAAGATGTTGCAAAACATGTCTCAGCAAGAGCAAACTCCACCAAGTCACCAAAGACTCAGACACAGTGCAAGAACAAGATTGAGTCCATGAAGAAAAGGTACAGATCAGAGTCTGCCACCACTGCTGATGCCTCATCTTGGCCTTTGTATTCTCGCCTCGACGTTCTGCTCCGCGGGACGGGACTGATATCTTCTTCGCTGCCACCACCAATAGCAGCAACAGCGATAGCAGCACCATCTCAATCACCACATGCTACTATAAATAATAACCAGGCTTTGGTGTTGTTGGAGCCACCTTCACTGGCTGTGTTACAAGCACCTCCTTCTGTTGCTCCTCCACCAATTGCAATTGCACAAAACTCACATGGACCCAATGGTGTTGAAAGACTACTAGCCAAGTGGTTAAGAGCCTTAATGTTTCAGTTACCTAGTGCTACTCCATCTTCCCAGTGTCTCACACAAGCACAAACAGACCTAGCTCATTGCATCTCTCCAAGAACAGACCTGCAGCTTTCCACCACCGTTGTTGCAACGCAGCAGCTATATATATCTCAACATTTTATTGTGTAGTTGTCAACCACCGCCGTCACTGCGCTATATCACCATGACAAAATGTTAAGGGATTATTGCTTCTCTGTCATACTCTTTCCGTTGTAGATACGAGAAAATTTGTTGGGAATCTAATGTCAATAAAATGATGCTGATTAATCATCCATTAATGTCCATTTCTTAGTTAAAGTTCAAAAACAGTTAAGTAACCCAACTAAGAGCTAACCACGGTATAACTTGTTTGGTCACCTCAAATTTGCATTTTGCAAATTGTCATTTTTATTATGTTTAATTTCTTAAGGAGCCAATGTTTGAATCTTTGAATTTAGTAGAGGTCTAAAGAATTAAATTTAGAAAAACTAGATTGATGTTGAGTATATTTGCAGTGCCAAAAGGGAAACATTCACAGTAGCCTTCTATTTTATTTTGTCACTACAATGTTCTTGGAGGAATCGCATCCAGTGTGGACTTGATGAGGAACAGATTTAGAGATACAAACGGAGTTGCAAAAATATTGCAGTGTTTGTCTCATATTCTTTAGTTGTCGCAGGGTAAATGAAAAACAAAGGGTCTATCTTGTTGAATCCTCTTCTAGTGTCTAGTAACTCTTTCATAAAATAAATCTAAGCCTCTGGATTTGAGAAAAATAAAGGATTCAGATTAAGAGTAACATTTTAAAGTTACTCCTAAAATAAGAGGATCCCTCCTAAGTTAGTAAGACCCATTATTAGAAGATGACCTAAATCTTCCATTATACTTTATATGCATTATATATAAAAATCATTGCAACGGACAAAAATAGGTGTCTTAATGTGTAGGAGCTATGTTGCTATCTTTTAATATACTTTAACCATA >Glyma04g17330.4 sequence type=transcript gene model=Glyma04g17330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGAGCACCACCTCTTACACAAAAAGCAAGAAGAAAAAGAAAAATTCAAGGCATTGACATCATTAACTCATTTGACAAAAGTGATCATTTTTCCCCCTTTCCACCACCCACTATTGATATTTTCCATTTCTTTTTTCTTTTTTAACTTTCTTTCTAATGCTAGTGGTTGTCTCCCTCTTGTTTACCTTTTCTTATTCATAAACTCACATTGAAACTTTGAAGCATGTTAGCAGCTAAACACTTCAAAGGGTAGTTAAAAACTTTGTAGTTCATGGGGATGAGAAATGGAGGATAATAATAATAATAATAACAAAGCAGAGAAGCAGCAAGATGATAGTAGCCACCACCCATCTCTCCTCCTTCCTAAACCTAATCATAGCACCATCAACAACATCAAGGAGGATCATCATCAGTCTCCAAGAAAATTAGCCATTGGTGGTGGTGGCGGTGGCAGTGGTGATAGGCTGAAGAGAGATGAGTGGAGTGAAGGAGCTGTGACAACCCTTCTTGAGGCCTATGAGGCCAAATGGGTGCACAGAAACAGAGCCAAACTCAAAGGCCATGACTGGGAAGATGTTGCAAAACATGTCTCAGCAAGAGCAAACTCCACCAAGTCACCAAAGACTCAGACACAGTGCAAGAACAAGATTGAGTCCATGAAGAAAAGGTACAGATCAGAGTCTGCCACCACTGCTGATGCCTCATCTTGGCCTTTGTATTCTCGCCTCGACGTTCTGCTCCGCGGGACGGGACTGATATCTTCTTCGCTGCCACCACCAATAGCAGCAACAGCGATAGCAGCACCATCTCAATCACCACATGCTACTATAAATAATAACCAGGCTTTGGTGTTGTTGGAGCCACCTTCACTGGCTGTGTTACAAGCACCTCCTTCTGTTGCTCCTCCACCAATTGCAATTGCACAAAACTCACATGGACCCAATGGTGTTGAAAGACTACTAGCCAAGTTACCTAGTGCTACTCCATCTTCCCAGTGTCTCACACAAGCACAAACAGACCTAGCTCATTGCATCTCTCCAAGAACAGACCTGCAGCTTTCCACCACCGTTGTTGCAACGCAGCAGCTATATATATCTCAACATTTTATTGTGTAGTTGTCAACCACCGCCGTCACTGCGCTATATCACCATGACAAAATGTTAAGGGATTATTGCTTCTCTGTCATACTCTTTCCGTTGTAGATACGAGAAAATTTGTTGGGAATCTAATGTCAATAAAATGATGCTGATTAATCATCCATTAATGTCCATTTCTTAGTTAAAGTTCAAAAACAGTTAAGTAACCCAACTAAGAGCTAACCACGGTATAACTTGTTTGGTCACCTCAAATTTGCATTTTGCAAATTGTCATTTTTATTATGTTTAATTTCTTAAGGAGCCAATGTTTGAATCTTTGAATTTAGTAGAGGTCTAAAGAATTAAATTTAGAAAAACTAGATTGATGTTGAGTATATTTGCAGTGCCAAAAGGGAAACATTCACAGTAGCCTTCTATTTTATTTTGTCACTACAATGTTCTTGGAGGAATCGCATCCAGTGTGGACTTGATGAGGAACAGATTTAGAGATACAAACGGAGTTGCAAAAATATTGCAGTGTTTGTCTCATATTCTTTAGTTGTCGCAGGGTAAATGAAAAACAAAGGGTCTATCTTGTTGAATCCTCTTCTAGTGTCTAGTAACTCTTTCATAAAATAAATCTAAGCCTCTGGATTTGAGAAAAATAAAGGATTCAGATTAAGAGTAACATTTTAAAGTTACTCCTAAAATAAGAGGATCCCTCCTAAGTTAGTAAGACCCATTATTAGAAGATGACCTAAATCTTCCATTATACTTTATATGCATTATATATAAAAATCATTGCAACGGACAAAAATAGGTGTCTTAATGTGTAGGAGCTATGTTGCTATCTTTTAATATACTTTAACCATA
>Glyma04g17330.2 sequence type=CDS gene model=Glyma04g17330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGATAATAATAATAATAATAACAAAGCAGAGAAGCAGCAAGATGATAGTAGCCACCACCCATCTCTCCTCCTTCCTAAACCTAATCATAGCACCATCAACAACATCAAGGAGGATCATCATCAGTCTCCAAGAAAATTAGCCATTGGTGGTGGTGGCGGTGGCAGTGGTGATAGGCTGAAGAGAGATGAGTGGAGTGAAGGAGCTGTGACAACCCTTCTTGAGGCCTATGAGGCCAAATGGGTGCACAGAAACAGAGCCAAACTCAAAGGCCATGACTGGGAAGATGTTGCAAAACATGTCTCAGCAAGAGCAAACTCCACCAAGTCACCAAAGACTCAGACACAGTGCAAGAACAAGATTGAGTCCATGAAGAAAAGGTACAGATCAGAGTCTGCCACCACTGCTGATGCCTCATCTTGGCCTTTGTATTCTCGCCTCGACGTTCTGCTCCGCGGGACGGGACTGATATCTTCTTCGCTGCCACCACCAATAGCAGCAACAGCGATAGCAGCACCATCTCAATCACCACATGCTACTATAAATAATAACCAGGCTTTGGTGTTGTTGGAGCCACCTTCACTGGCTGTGTTACAAGCACCTCCTTCTGTTGCTCCTCCACCAATTGCAATTGCACAAAACTCACATGGACCCAATGGTGTTGAAAGACTACTAGCCAAGGAAGATGGGATAGGAGCCAAGTCATCTGAGCAAGTATCTAACAAGAATCCAATGGACTCGGATAGTAGCACACCTGCTCTTTACAGTAAAAAAGACAAGGTGAGATGCAACAAGAGGAAGATGAAAAGTGAGAACAACAACAAGAGGAGAAGGAATAATAATAATAATAATGAAGACGTGGAAATAGCAAAGAGCATCAGGTGGCTTGCAGAAGTGGTGGTGAGATCAGAACAAACAAGAATGGACACAATGAAAGAGATTGAGAGGATGAGAGTTGAAGCTGAGGCAAAGAGAGGGGAGATGGAGCTTAAGAGAACTGAAATCATTGCCAATACCCAACTAGAGATTGCTAGGATCTTTGCAAGTGTCAATAAAGGTGTTGATTCTTCACTGAGAATTGGAAGAAGTTAA >Glyma04g17330.3 sequence type=CDS gene model=Glyma04g17330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGATAATAATAATAATAATAACAAAGCAGAGAAGCAGCAAGATGATAGTAGCCACCACCCATCTCTCCTCCTTCCTAAACCTAATCATAGCACCATCAACAACATCAAGGAGGATCATCATCAGTCTCCAAGAAAATTAGCCATTGGTGGTGGTGGCGGTGGCAGTGGTGATAGGCTGAAGAGAGATGAGTGGAGTGAAGGAGCTGTGACAACCCTTCTTGAGGCCTATGAGGCCAAATGGGTGCACAGAAACAGAGCCAAACTCAAAGGCCATGACTGGGAAGATGTTGCAAAACATGTCTCAGCAAGAGCAAACTCCACCAAGTCACCAAAGACTCAGACACAGTGCAAGAACAAGATTGAGTCCATGAAGAAAAGGTACAGATCAGAGTCTGCCACCACTGCTGATGCCTCATCTTGGCCTTTGTATTCTCGCCTCGACGTTCTGCTCCGCGGGACGGGACTGATATCTTCTTCGCTGCCACCACCAATAGCAGCAACAGCGATAGCAGCACCATCTCAATCACCACATGCTACTATAAATAATAACCAGGCTTTGGTGTTGTTGGAGCCACCTTCACTGGCTGTGTTACAAGCACCTCCTTCTGTTGCTCCTCCACCAATTGCAATTGCACAAAACTCACATGGACCCAATGGTGTTGAAAGACTACTAGCCAAGTGGTTAAGAGCCTTAATGTTTCAGTTACCTAGTGCTACTCCATCTTCCCAGTGTCTCACACAAGCACAAACAGACCTAGCTCATTGCATCTCTCCAAGAACAGACCTGCAGCTTTCCACCACCGTTGTTGCAACGCAGCAGCTATATATATCTCAACATTTTATTGTGTAG >Glyma04g17330.4 sequence type=CDS gene model=Glyma04g17330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGATAATAATAATAATAATAACAAAGCAGAGAAGCAGCAAGATGATAGTAGCCACCACCCATCTCTCCTCCTTCCTAAACCTAATCATAGCACCATCAACAACATCAAGGAGGATCATCATCAGTCTCCAAGAAAATTAGCCATTGGTGGTGGTGGCGGTGGCAGTGGTGATAGGCTGAAGAGAGATGAGTGGAGTGAAGGAGCTGTGACAACCCTTCTTGAGGCCTATGAGGCCAAATGGGTGCACAGAAACAGAGCCAAACTCAAAGGCCATGACTGGGAAGATGTTGCAAAACATGTCTCAGCAAGAGCAAACTCCACCAAGTCACCAAAGACTCAGACACAGTGCAAGAACAAGATTGAGTCCATGAAGAAAAGGTACAGATCAGAGTCTGCCACCACTGCTGATGCCTCATCTTGGCCTTTGTATTCTCGCCTCGACGTTCTGCTCCGCGGGACGGGACTGATATCTTCTTCGCTGCCACCACCAATAGCAGCAACAGCGATAGCAGCACCATCTCAATCACCACATGCTACTATAAATAATAACCAGGCTTTGGTGTTGTTGGAGCCACCTTCACTGGCTGTGTTACAAGCACCTCCTTCTGTTGCTCCTCCACCAATTGCAATTGCACAAAACTCACATGGACCCAATGGTGTTGAAAGACTACTAGCCAAGTTACCTAGTGCTACTCCATCTTCCCAGTGTCTCACACAAGCACAAACAGACCTAGCTCATTGCATCTCTCCAAGAACAGACCTGCAGCTTTCCACCACCGTTGTTGCAACGCAGCAGCTATATATATCTCAACATTTTATTGTGTAG
>Glyma04g17330.2 sequence type=predicted peptide gene model=Glyma04g17330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDNNNNNNKAEKQQDDSSHHPSLLLPKPNHSTINNIKEDHHQSPRKLAIGGGGGGSGDRLKRDEWSEGAVTTLLEAYEAKWVHRNRAKLKGHDWEDVAKHVSARANSTKSPKTQTQCKNKIESMKKRYRSESATTADASSWPLYSRLDVLLRGTGLISSSLPPPIAATAIAAPSQSPHATINNNQALVLLEPPSLAVLQAPPSVAPPPIAIAQNSHGPNGVERLLAKEDGIGAKSSEQVSNKNPMDSDSSTPALYSKKDKVRCNKRKMKSENNNKRRRNNNNNNEDVEIAKSIRWLAEVVVRSEQTRMDTMKEIERMRVEAEAKRGEMELKRTEIIANTQLEIARIFASVNKGVDSSLRIGRS* >Glyma04g17330.3 sequence type=predicted peptide gene model=Glyma04g17330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDNNNNNNKAEKQQDDSSHHPSLLLPKPNHSTINNIKEDHHQSPRKLAIGGGGGGSGDRLKRDEWSEGAVTTLLEAYEAKWVHRNRAKLKGHDWEDVAKHVSARANSTKSPKTQTQCKNKIESMKKRYRSESATTADASSWPLYSRLDVLLRGTGLISSSLPPPIAATAIAAPSQSPHATINNNQALVLLEPPSLAVLQAPPSVAPPPIAIAQNSHGPNGVERLLAKWLRALMFQLPSATPSSQCLTQAQTDLAHCISPRTDLQLSTTVVATQQLYISQHFIV* >Glyma04g17330.4 sequence type=predicted peptide gene model=Glyma04g17330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDNNNNNNKAEKQQDDSSHHPSLLLPKPNHSTINNIKEDHHQSPRKLAIGGGGGGSGDRLKRDEWSEGAVTTLLEAYEAKWVHRNRAKLKGHDWEDVAKHVSARANSTKSPKTQTQCKNKIESMKKRYRSESATTADASSWPLYSRLDVLLRGTGLISSSLPPPIAATAIAAPSQSPHATINNNQALVLLEPPSLAVLQAPPSVAPPPIAIAQNSHGPNGVERLLAKLPSATPSSQCLTQAQTDLAHCISPRTDLQLSTTVVATQQLYISQHFIV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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