SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G15220 | AT | Annotation by Michelle Graham. TAIR10: Ribosomal protein L27 family protein | chr5:4941466-4942133 REVERSE LENGTH=154 | SoyBase | E_val: 5.00E-67 | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| KOG4600 | KOG | Mitochondrial ribosomal protein MRP7 (L2) | JGI | ISS | |
| PTHR15893 | Panther | RIBOSOMAL PROTEIN L27 | JGI | ISS | |
| PF01016 | PFAM | Ribosomal L27 protein | JGI | ISS | |
| UniRef100_B7FGL1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L27 n=1 Tax=Medicago truncatula RepID=B7FGL1_MEDTR | SoyBase | E_val: 2.00E-92 | ISS |
| UniRef100_C6TCI4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TCI4_SOYBN | SoyBase | E_val: 6.00E-103 | ISS |
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Glyma04g16890 not represented in the dataset |
Glyma04g16890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g134300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g16890.2 sequence type=transcript gene model=Glyma04g16890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGCCCCGCATCTGCGAGTGCGCGAGCCTCCCTCTCTACCGTCGTCACTACTTCTTTACCGCTTGGGGCGTCACTCTCCCTCTGCTTTACCTTTTCCATCCGTTTAGAGCAACGCTCGATCTTTCTCGTTACACACTCGATCCCTCGACTCGGTGCTCGTTGCTCACTTTCTCTGTTCATCACAATCTCTCTCTCACTCATTGGTTGTGTTTTTGTCCATAGAAAACATCATGAATTTTGCAGCATCATTGTGCAGAAGATTGAATATCAAGGAACTTGCGACAAATGTTCCTGTGTATAAAAGCACCAGTGATGTTTCTGGAGAAGGTTTGAGTTTCACGTTCAGGCGTTGGGCTTCCAAAAAGACTGCTGGTTCCACAAAGAATGGACGGGATTCAAAACCCAAGAACCTTGGAGTGAAGAAATTTGGTGGGGAGAGGGTGATACCTGGAAATATCATTGTTCGACAGCGTGGCACTCGTTTTCATCCAGGAAACTATGTTGGACTTGGGAAAGATCATTCTCTGTTTGCATTGAAAGAGGGATGGGTGAAGTTTGAACGGAACAAGTTGACTGGTCGCAAGTGGGTGCATGTTGAGCCTAAGGAAGGTCATGTTCTCCACCCTCTGTATGCAGCAGATGCTTCTGCATCTGAACTAAAAGTTGCTGTCTAAGTCTCATCTGTCATCAGTATCATCCATGATAGAAATTTTTATTTGGTCACAAAATTCAGCTTTACCTTCTTGGTTTATCTGAACTTCTAGATGTTCAACCTCTGCCTTAATTTATACCATCTTTAATTGAAAAACTAATCAGTTGTTTTGGTACATCCTCTTCCATTGGAAGCATTTAAAAGATTGAGTCCCGAAGGCAAGATTAGTTGGTACTTCAGCATGCTGGAGAGTTGCTCCTTTTTGTATTTGTCAAATTATGCCTGATTATTAGAACTGTAATTGGTTAGGGAGAGTGCTTGATCAAATTTTGATCGGATCATGTAGGAATAAGGTTCAATTTTACCGATATGTTCAACTACATTCATAAAAGCACTTCTACCTGACACATCGTTAAACTTATGTTTCCGTGTGACCTTTTCATGAATTCTCAAAACTTATTTCACTCCATCCCCGTACGTGTAGAGAATCCATTGCTATCTCAGATGTGCTTCCAAAGGCACTGGGGTTAGCTAGCTAATTTGTAATCAATTATTTAGCTACCATTTACCCTGGTTAAATAATTTTAGAACTATGTCTTAAAGTAAATCGATAGATGATTGACTTGATAATAAGATCATGGATCTTATAAAGCTAGACAAGATCCTCTAGATTGGCCATACTTTCTTTATTTTAAATAAGGTTCTTAATATAT
>Glyma04g16890.1 sequence type=CDS gene model=Glyma04g16890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATTTTGCAGCATCATTGTGCAGAAGATTGAATATCAAGGAACTTGCGACAAATGTTCCTGTGTATAAAAGCACCAGTGATGTTTCTGGAGAAGGTTTGAGTTTCACGTTCAGGCGTTGGGCTTCCAAAAAGACTGCTGGTTCCACAAAGAATGGACGGGATTCAAAACCCAAGAACCTTGGAGTGAAGAAATTTGGTGGGGAGAGGGTGATACCTGGAAATATCATTGTTCGACAGCGTGGCACTCGTTTTCATCCAGGAAACTATGTTGGACTTGGGAAAGATCATTCTCTGTTTGCATTGAAAGAGGGATGGGTGAAGTTTGAACGGAACAAGTTGACTGGTCGCAAGTGGGTGCATGTTGAGCCTAAGGAAGGTCATGTTCTCCACCCTCTGTATGCAGCAGATGCTTCTGCATCTGAACTAAAAGTTGCTGTCTAA >Glyma04g16890.2 sequence type=CDS gene model=Glyma04g16890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATTTTGCAGCATCATTGTGCAGAAGATTGAATATCAAGGAACTTGCGACAAATGTTCCTGTGTATAAAAGCACCAGTGATGTTTCTGGAGAAGGTTTGAGTTTCACGTTCAGGCGTTGGGCTTCCAAAAAGACTGCTGGTTCCACAAAGAATGGACGGGATTCAAAACCCAAGAACCTTGGAGTGAAGAAATTTGGTGGGGAGAGGGTGATACCTGGAAATATCATTGTTCGACAGCGTGGCACTCGTTTTCATCCAGGAAACTATGTTGGACTTGGGAAAGATCATTCTCTGTTTGCATTGAAAGAGGGATGGGTGAAGTTTGAACGGAACAAGTTGACTGGTCGCAAGTGGGTGCATGTTGAGCCTAAGGAAGGTCATGTTCTCCACCCTCTGTATGCAGCAGATGCTTCTGCATCTGAACTAAAAGTTGCTGTCTAA
>Glyma04g16890.1 sequence type=predicted peptide gene model=Glyma04g16890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNFAASLCRRLNIKELATNVPVYKSTSDVSGEGLSFTFRRWASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHSLFALKEGWVKFERNKLTGRKWVHVEPKEGHVLHPLYAADASASELKVAV* >Glyma04g16890.2 sequence type=predicted peptide gene model=Glyma04g16890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNFAASLCRRLNIKELATNVPVYKSTSDVSGEGLSFTFRRWASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHSLFALKEGWVKFERNKLTGRKWVHVEPKEGHVLHPLYAADASASELKVAV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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