SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G09860 | AT | Annotation by Michelle Graham. TAIR10: nuclear matrix protein-related | chr5:3066815-3070733 FORWARD LENGTH=599 | SoyBase | E_val: 0 | ISS |
| GO:0006406 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0031047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2491 | KOG | Nuclear matrix protein | JGI | ISS | |
| PTHR13265 | Panther | NUCLEAR MATRIX PROTEIN | JGI | ISS | |
| PF11957 | PFAM | THO complex subunit 1 transcription elongation factor | JGI | ISS | |
| UniRef100_B9SVG7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nuclear matrix protein, putative n=1 Tax=Ricinus communis RepID=B9SVG7_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_F6HVB5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=F6HVB5_VITVI | SoyBase | E_val: 0 | ISS |
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Glyma04g16805 not represented in the dataset |
Glyma04g16805 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g133800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g16805.1 sequence type=CDS gene model=Glyma04g16805 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGTATTCAAAAGGGCCATAATACAGCCTGGGCCACCGGAAAGTTTTGCTTTGAGGACGGTTCAAGAAGTAATTAAGCCTCAGAAACAAACAAAATTGGCCCAAGATGAGAACCAGTTCCTAGAAAATATTCTACGTATGTTGCTTCAGGAGTTTGTGTCAGCAGCGGTACAGTTTGGGGAGAAAATCATGCAATTTGGCCAATCAATTGATTCTAGTGAAACTACCCAGGGCCACATTCCCCGCCTTCTTGATATTGTGCTATATCTTTGTGAGAAAGAACACATTGAAGGTGGTATGATTTTTCAGCTGTTGGAAGACTTGACAGAAATGTCTACAATGAAAAACTGCAAAGATATTTTTGGTTATATAGAGAGTAAGCAAGATATATTGGGCAAGCAAGAACTTTTTGCTCGAGGAAAACTTGTGATGCTGAGAACCTGCAATCAGCTTCTTCGTCGACTGTCAAAGGCAAATGATGTGGTCTTTTGTGGAAGAATTCTCATGTTTCTAGCTCATTTCTTTCCGTTATCAGAGCGATCAGCCTTAAATATCAAAGGAGTTTTTAACACATCAAACGAAACAAAATATGAAAAAGAACCCTTGGAAGGCATATGTATTGATTTCAATTTTTATCAGACTTTTTGGGGTCTACAGGAATATTTTTCTAACCCTACTTCCATAAGTCATGCTCCGGCAAAGTGGCAGAAATTTACCTTGAGTTTGTCGGTTGTACTGAATACATTTGAAGCACAACCTTTGAGTGATGAAGAAGGAGATGCCAATAATTTGGAGGAAGAGGCAGTTAATTTTAGTATAAAATATCTTACAAGCAGCAAACTAATGGGTCTAGAGTTAAAAGATCCAAGTTTTCGACGCCATGTTCTTGTACAGTGTCTTATATTGTTTGATTACTTGAAGGCCCCTGGAAAAGGTGACAAGGATTTGCCATCTGAAAACATGAAAGAAGAGATTACATCATGGGAGGAACGTGTTAAAAAACTTCTTGAACTGACACCACCAAAAGGGACAGAATTTCTTCACAAAATTGAGCATATATTGGAACGAGAAAAAAATTGGGTGTGGTGGAAACGTGATGGCTGCCTCCCATATGAAAAACAACGTATAGAGAAGAAAGCAGTACCAGATGGGCCCAAGAAACGTAGGCCAAGATGGAGATTGGGTAATAAAGAACTGTCTCAGTTGTGGAAATGGGCAGATCAAAATCCGAATGCTTTAACTGATCCTCAACGTGTTCAAACACCTTCAATTATGGAGTACTGGAAACCCTTGGCTGAAGATATGGATCCCTCTGCTGGAATAGAAGCCGATTATCATCACAAGAATAACAGGGTTTATTGTTGGAAAGGTCTTAGGCTTTCAGCACGACAAGACTTGGAGGGATTTTCTAAGTTTACTGATCATGGCATTGAAGGGGTTGTCCCTCTAGAACTTTTGCCACCTGATGTCCGATCTAAATACCAAGCTAAACCAAATGACAGAAGTAAGCGTAGTAAAAAGGAAGAAACAAAAGGCACTGCCCATCAAATTGAGGAAAATCAGATTGCTACAAATGCAACTGAGATCGATGGTGATGGCATTAGAACAGATACCACAGCAACATCTATGGAATTTGATGCTGCAACTGCCCCTGGTACACAAGGTGGGACCACAACGCCTGAAGAACTTCAGAAGCTCAGCTCAGACACTGATGGTGGTCAGGAAGCAGGCCAATTGGAAGCTGATGCCGAAGTTGAGGCCGGAATGATAGATGGAGAGACAGATGCAGATGTTGATTTAGATACTGTTGGCTGA
>Glyma04g16805.1 sequence type=predicted peptide gene model=Glyma04g16805 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEVFKRAIIQPGPPESFALRTVQEVIKPQKQTKLAQDENQFLENILRMLLQEFVSAAVQFGEKIMQFGQSIDSSETTQGHIPRLLDIVLYLCEKEHIEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSALNIKGVFNTSNETKYEKEPLEGICIDFNFYQTFWGLQEYFSNPTSISHAPAKWQKFTLSLSVVLNTFEAQPLSDEEGDANNLEEEAVNFSIKYLTSSKLMGLELKDPSFRRHVLVQCLILFDYLKAPGKGDKDLPSENMKEEITSWEERVKKLLELTPPKGTEFLHKIEHILEREKNWVWWKRDGCLPYEKQRIEKKAVPDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVQTPSIMEYWKPLAEDMDPSAGIEADYHHKNNRVYCWKGLRLSARQDLEGFSKFTDHGIEGVVPLELLPPDVRSKYQAKPNDRSKRSKKEETKGTAHQIEENQIATNATEIDGDGIRTDTTATSMEFDAATAPGTQGGTTTPEELQKLSSDTDGGQEAGQLEADAEVEAGMIDGETDADVDLDTVG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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