Glyma04g16350 - SoyBase

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Report for Sequence Feature Glyma04g16350

Feature Type:	gene_model
Chromosome:	Gm04
Start:	17462209
stop:	17465287
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g16350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G40770	AT	Annotation by Michelle Graham. TAIR10: prohibitin 3 \| chr5:16315589-16316621 REVERSE LENGTH=277	SoyBase	E_val: 1.00E-169	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0007005	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrion organization	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0048527	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root development	SoyBase	N/A	ISS
GO:0051301	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell division	SoyBase	N/A	ISS
GO:0071731	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitric oxide	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005747	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex I	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
KOG3083	KOG	Prohibitin	JGI		ISS
PTHR23222	Panther	PROHIBITIN	JGI		ISS
PF01145	PFAM	SPFH domain / Band 7 family	JGI		ISS
UniRef100_G7IVL7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Prohibitin n=2 Tax=Medicago truncatula RepID=G7IVL7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JW13	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JW13_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g16350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g16350 not represented in the dataset	Glyma04g16350 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g16350

Paralog	Evidence	Comments
Glyma06g47520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g16350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g131800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g16350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g16350

Limit To All Plant Sequences

>Glyma04g16350.2   sequence type=transcript   gene model=Glyma04g16350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTATTTACTCAATTAACAATGAGAACCCCAAAACTAAACCCCAACAAAACCTAAAACCCTCTCTCATTTCCAATCCCCTAAACCCTAACCTCTCCTCAATGGGTAGAAACGAAGCCGCCATTTCCTTCCTCACCAACGTCGCCCGCACTGCCTTCGGCCTGGGCGCGGCGGCCACCGCCGTCTCCTCTTCCCTCTACACCGTCGACGGCGGCCAGCGCGCCGTCCTCTTCGACCGCTTCCGCGGCATCCTGGACTCCACCGTCGGCGAAGGGACCCACTTCCTCATCCCCTGGGTCCAGAAACCCTACATCTTCGACATCCGCACTCGTCCCCACACCTTCTCCTCCGTCTCCGGCACCAAGGACCTCCAGATGGTTAACCTAACCCTCCGCGTCCTCTCCCGCCCCGACACCGAGAAGCTCCCCACCATCGTCCAGAACCTCGGCCTCGAATACGATGAAAAGGTCCTCCCTTCCATCGGCAACGAGGTCCTCAAGGCCGTCGTCGCGCAGTTCAACGCCGATCAGCTGCTCACGGAGCGGTCACAGGTCTCCGCCCTCGTCCGTGACAGCCTCATTCGTCGCGCCAAAGACTTCAACATCGTTCTCGATGACGTCGCGATTACTCACCTCTCCTACGGCGGGGAATTCTCCCGCGCAGTGGAGCAGAAGCAGGTGGCGCAGCAGGAGGCGGAGAGATCGAAGTTTGTGGTGATGAAGGCTGAGCAGGAGCGGAGGGCCGCCATTATTAGGGCTGAGGGTGAGAGCGATGCGGCCAAGCTGATCTCGGACGCCACTGCCTCGGCCGGGATGGGGCTGATCGAGCTAAGGAGGATTGAGGCGTCCAGGGAGGTGGCGGCCACGCTGGCGAAGTCGCCCAACGTCTCGTATTTGCCCGGTGGACAGAACTTGCTCATGGCTCTCGGTCCTTCGCGGTGATCATTGTGGCGGTGATGGTAATCTGTTTGTTGAATTGATTTTGAAGGCTCAAAGATGCTGTGTGATGACATGCTTGGATCATCATTGTCTTTAGTTTTTCCGTTGTTGGAAATATTTTTCTTGTGTTTTCACTTGTAGACTCTCTCATTTGAGCATAGTTCATAATGATTTTAGGAAGGTAATAAGTTAGAAATGAATTTGGACCTTCGTTTTTTCATGGTGAAAGGGTCTGTTTAGTTGCAGAGTAATAACTATCTCCAAAGTATATAAGGTGAGAGAGGAACTTGAATACTTGATTGTGTGGTTAATGTTGGTTCTTTGACCTTATCATCAATTTACCGAAGTATTTCAATACAGTCGGTGCCTTCGGTTCAATTTTATTTGTCAATTTGGCTATTTTTGCTTGGAAATCAGATAAACTTGTTTTGGTTGTGAATCAGGCAATGTAACTGTATATGTCCTTGAG

Coding sequences of Glyma04g16350

Limit To All Plant Sequences

>Glyma04g16350.1   sequence type=CDS   gene model=Glyma04g16350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAGAAACGAAGCCGCCATTTCCTTCCTCACCAACGTCGCCCGCACTGCCTTCGGCCTGGGCGCGGCGGCCACCGCCGTCTCCTCTTCCCTCTACACCGTCGACGGCGGCCAGCGCGCCGTCCTCTTCGACCGCTTCCGCGGCATCCTGGACTCCACCGTCGGCGAAGGGACCCACTTCCTCATCCCCTGGGTCCAGAAACCCTACATCTTCGACATCCGCACTCGTCCCCACACCTTCTCCTCCGTCTCCGGCACCAAGGACCTCCAGATGGTTAACCTAACCCTCCGCGTCCTCTCCCGCCCCGACACCGAGAAGCTCCCCACCATCGTCCAGAACCTCGGCCTCGAATACGATGAAAAGGTCCTCCCTTCCATCGGCAACGAGGTCCTCAAGGCCGTCGTCGCGCAGTTCAACGCCGATCAGCTGCTCACGGAGCGGTCACAGGTCTCCGCCCTCGTCCGTGACAGCCTCATTCGTCGCGCCAAAGACTTCAACATCGTTCTCGATGACGTCGCGATTACTCACCTCTCCTACGGCGGGGAATTCTCCCGCGCAGTGGAGCAGAAGCAGGTGGCGCAGCAGGAGGCGGAGAGATCGAAGTTTGTGGTGATGAAGGCTGAGCAGGAGCGGAGGGCCGCCATTATTAGGGCTGAGGGTGAGAGCGATGCGGCCAAGCTGATCTCGGACGCCACTGCCTCGGCCGGGATGGGGCTGATCGAGCTAAGGAGGATTGAGGCGTCCAGGGAGGTGGCGGCCACGCTGGCGAAGTCGCCCAACGTCTCGTATTTGCCCGGTGGACAGAACTTGCTCATGGCTCTCGGTCCTTCGCGGTGA

>Glyma04g16350.2   sequence type=CDS   gene model=Glyma04g16350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAGAAACGAAGCCGCCATTTCCTTCCTCACCAACGTCGCCCGCACTGCCTTCGGCCTGGGCGCGGCGGCCACCGCCGTCTCCTCTTCCCTCTACACCGTCGACGGCGGCCAGCGCGCCGTCCTCTTCGACCGCTTCCGCGGCATCCTGGACTCCACCGTCGGCGAAGGGACCCACTTCCTCATCCCCTGGGTCCAGAAACCCTACATCTTCGACATCCGCACTCGTCCCCACACCTTCTCCTCCGTCTCCGGCACCAAGGACCTCCAGATGGTTAACCTAACCCTCCGCGTCCTCTCCCGCCCCGACACCGAGAAGCTCCCCACCATCGTCCAGAACCTCGGCCTCGAATACGATGAAAAGGTCCTCCCTTCCATCGGCAACGAGGTCCTCAAGGCCGTCGTCGCGCAGTTCAACGCCGATCAGCTGCTCACGGAGCGGTCACAGGTCTCCGCCCTCGTCCGTGACAGCCTCATTCGTCGCGCCAAAGACTTCAACATCGTTCTCGATGACGTCGCGATTACTCACCTCTCCTACGGCGGGGAATTCTCCCGCGCAGTGGAGCAGAAGCAGGTGGCGCAGCAGGAGGCGGAGAGATCGAAGTTTGTGGTGATGAAGGCTGAGCAGGAGCGGAGGGCCGCCATTATTAGGGCTGAGGGTGAGAGCGATGCGGCCAAGCTGATCTCGGACGCCACTGCCTCGGCCGGGATGGGGCTGATCGAGCTAAGGAGGATTGAGGCGTCCAGGGAGGTGGCGGCCACGCTGGCGAAGTCGCCCAACGTCTCGTATTTGCCCGGTGGACAGAACTTGCTCATGGCTCTCGGTCCTTCGCGGTGA

Predicted protein sequences of Glyma04g16350

Limit To All Plant Sequences

>Glyma04g16350.1   sequence type=predicted peptide   gene model=Glyma04g16350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRNEAAISFLTNVARTAFGLGAAATAVSSSLYTVDGGQRAVLFDRFRGILDSTVGEGTHFLIPWVQKPYIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPDTEKLPTIVQNLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERSQVSALVRDSLIRRAKDFNIVLDDVAITHLSYGGEFSRAVEQKQVAQQEAERSKFVVMKAEQERRAAIIRAEGESDAAKLISDATASAGMGLIELRRIEASREVAATLAKSPNVSYLPGGQNLLMALGPSR*

>Glyma04g16350.2   sequence type=predicted peptide   gene model=Glyma04g16350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRNEAAISFLTNVARTAFGLGAAATAVSSSLYTVDGGQRAVLFDRFRGILDSTVGEGTHFLIPWVQKPYIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPDTEKLPTIVQNLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERSQVSALVRDSLIRRAKDFNIVLDDVAITHLSYGGEFSRAVEQKQVAQQEAERSKFVVMKAEQERRAAIIRAEGESDAAKLISDATASAGMGLIELRRIEASREVAATLAKSPNVSYLPGGQNLLMALGPSR*

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