SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G64610 | AT | Annotation by Michelle Graham. TAIR10: histone acetyltransferase of the MYST family 1 | chr5:25828333-25830503 REVERSE LENGTH=445 | SoyBase | E_val: 0 | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0008284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0010224 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV-B | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004402 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histone acetyltransferase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016747 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups | SoyBase | N/A | ISS |
| KOG2747 | KOG | Histone acetyltransferase (MYST family) | JGI | ISS | |
| PTHR10615 | Panther | MYST-RELATED PROTEINS | JGI | ISS | |
| PF01853 | PFAM | MOZ/SAS family | JGI | ISS | |
| PF11717 | PFAM | RNA binding activity-knot of a chromodomain | JGI | ISS | |
| UniRef100_G7IVB8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Histone acetyltransferase n=1 Tax=Medicago truncatula RepID=G7IVB8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00018C72EC | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00018C72EC related cluster n=1 Tax=unknown RepID=UPI00018C72EC | SoyBase | E_val: 0 | ISS |
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Glyma04g16180 not represented in the dataset |
Glyma04g16180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g47380 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g130300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g16180.1 sequence type=CDS gene model=Glyma04g16180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTCACTCGAGGCCCCAACCGCCGCGGAAAACGGTTCCGCTCCCGCCGCCGGCAACGGAAAATCCCCCTCCGTCAACGGCGCGGAGGCGGCGCTGGAGCCCGACGCATCGAAGCGGCGGAGATCGTCGGTGCTCCCACTGGAGGTGGGCACGCGCGTCATGTGCCGGTGGAGGGACAACAAGTACCACCCCGTCAAAGTCATCGAACGCCGCAAGGTTCCCAACGTCATCCCCAACGATTACGAGTACTACGTCCATTACACTGAGTTCAATAGGAGGCTTGATGAGTGGGTGAAGCTTGACCAGTTGGATCTTAATTCAGTGGAGGCTGTTGTTGATGAGAAAGTGGAGGAGAAGGGTGCAACAGGTTTGAAGATGACTCGCCACCAAAAGAGGAAGATTGATGAGACACATGTAGAGGGACATGAGGAGCTTGATGCTGCCAGTTTGCGAGAACATGAGGAATTTACCAAAGTGAAAAATATAGCTACTATTGAGCTTGGAAGATATGAGATTGAGACATGGTACTTCTCCCCATTCCCACCAGAATACAATGACTGTTTGAAGCTGTACTTTTGTGAGTTTTGCCTCAATTTCATGAAACGCAAAGAACAGCTTCAGAGGCATATGAGGAAATGTGATCTTAAGCATCCCCCTGGTGATGAGATATACAGAAGTGGTACACTGTCAATGTTTGAGGTCGATGGCAAAAAGAACAAGGTTTATGGGCAGAATCTTTGTTATTTGGCCAAGTTATTTCTTGATCACAAGACCCTCTATTATGATGTAGACCTGTTTCTGTTCTATGTTTTATGTGAATGTGATGATCGAGGTTGTCACATGGTTGGCTATTTCTCCAAGGAAAAACATTCTGAGGAATCTTACAATTTGGCATGTATCCTCACCCTACCACCTTACCAAAGGAAAGGCTATGGCAAATTTCTAATTGCATTCTCATATGAGCTGTCCAAAAAAGAGGGCAAAGTTGGCACACCTGAAAGACCTCTTTCTGACCTTGGACTGCTAAGCTACAGAGGATATTGGACCAGGGTTCTCTTAGACATTCTGAAGAAGCATAAGGGAAACATTTCTATCAAGGAACTGAGTGATATGACTGCCATTAAAGCTGAAGACATATTAACCACTCTGCAGAGCCTAGAATTGATTCAATACAGGAAAGGTCAGCATGTTATATGCGCAGATCCGAAAGTGTTGGATCGCCATCTTAAAGCTGCTGGCAGAGGGGGCCTGGAGGTTGATGTTAGCAAACTGATCTGGACTCCTTATAAAGAACAAAGTTGA
>Glyma04g16180.1 sequence type=predicted peptide gene model=Glyma04g16180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSLEAPTAAENGSAPAAGNGKSPSVNGAEAALEPDASKRRRSSVLPLEVGTRVMCRWRDNKYHPVKVIERRKVPNVIPNDYEYYVHYTEFNRRLDEWVKLDQLDLNSVEAVVDEKVEEKGATGLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDCLKLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSYELSKKEGKVGTPERPLSDLGLLSYRGYWTRVLLDILKKHKGNISIKELSDMTAIKAEDILTTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLEVDVSKLIWTPYKEQS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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