Glyma04g16130 - SoyBase

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Report for Sequence Feature Glyma04g16130

Feature Type:	gene_model
Chromosome:	Gm04
Start:	17110133
stop:	17110649
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g16130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G11830	AT	Annotation by Michelle Graham. TAIR10: TCP-1/cpn60 chaperonin family protein \| chr3:3732734-3736156 FORWARD LENGTH=557	SoyBase	E_val: 2.00E-42	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0044267	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular protein metabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
PTHR11353	Panther	CHAPERONIN	JGI		ISS
PF00118	PFAM	TCP-1/cpn60 chaperonin family	JGI		ISS
UniRef100_G7K2W1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T-complex protein 1 subunit eta n=1 Tax=Medicago truncatula RepID=G7K2W1_MEDTR	SoyBase	E_val: 6.00E-41	ISS
UniRef100_I1JW01	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JW01_SOYBN	SoyBase	E_val: 2.00E-53	ISS

Expression Patterns of Glyma04g16130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g16130 not represented in the dataset	Glyma04g16130 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g16130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g129800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g16130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g16130

Limit To All Plant Sequences

>Glyma04g16130.1   sequence type=CDS   gene model=Glyma04g16130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAAGCTCATCCATGACGACAAGGGAGCCGTCACCATCTCCAACGACGGCGCCACCATCATGAAGCTCCTCGACATCGTCCACCTCGCTACAAAAATCCTCGCCGACATCGCCAAGTCTCAGGACTCCGAGGTTGGCGATGGAACCACCACTGTGGTGTTGCTTGCAGCTGAGTTTTTAAGGGAGGCCAAGCCATTCATTGAAGATGGTGTTCACTCTCAAAACTTTATAAAATTAATATTTTATATAATAAATTAA

Predicted protein sequences of Glyma04g16130

Limit To All Plant Sequences

>Glyma04g16130.1   sequence type=predicted peptide   gene model=Glyma04g16130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKLIHDDKGAVTISNDGATIMKLLDIVHLATKILADIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHSQNFIKLIFYIIN*

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