Glyma04g15890 - SoyBase

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Report for Sequence Feature Glyma04g15890

Feature Type:	gene_model
Chromosome:	Gm04
Start:	16733867
stop:	16736394
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g15890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44580	AT	Annotation by Michelle Graham. TAIR10: zinc ion binding \| chr2:18402081-18403412 REVERSE LENGTH=386	SoyBase	E_val: 2.00E-154	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0798	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR13395	Panther	SISTER CHROMATID COHESION PROTEIN DCC1-RELATED	JGI		ISS
PF09724	PFAM	Uncharacterized conserved protein (DUF2036)	JGI		ISS
UniRef100_B9SKI3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SKI3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JVZ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVZ0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g15890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g15890

Paralog	Evidence	Comments
Glyma06g46710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g15890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g128400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g15890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g15890

Limit To All Plant Sequences

>Glyma04g15890.1   sequence type=CDS   gene model=Glyma04g15890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCGCCTCCGCAGCTGGGTTCAAGAGGGGCAGAAACACTTAAACATATAGCTCCTGGATCATCAATTTCTGTTGCATATCACCCATCTTTTGGACCTTATGATGACCTCCTCTTTCTAGAGCTTGATGAGAAACTTCTCCCAGATGTTCTGAATGAAAGGGTGGTCTTGAGAGGACAGCCTGATGAAGATGCCGTTCTTTGTACTCTATCCAAAACCTATGCTATGAAGTTTGTTGGAACTTCCAATTCTGTTCTGCTTGTACCTCCAGCAAATCATTCGGAATTTAGTGAAAATCCACAAAAGAATGATAGTACTAATGATGAAGACAAAGTTGTTGTACCTGTACTCAAAGTTGTATCTGGTAATATGGAGCTTATTGAGACAGCCCCCAGACTTGATAAGCTTAAATTACTTCTGTCAGAAAAGCCTTACAAATTGGAGGAGGATGACATGGGAAATTTAGAAGAGAATCAGGAATCTAGAATAGGACTATATAACTGGAATTATCTTGTAGACAATATTCAAGCTAGTGACAAGGAATTATTGTCGGGACTGCAGGCTCTTTCAGCGCTGGAGATTAATGGGTATTGGAGACTAGTAGACGGGAGTTACATGGACATGATTCTGGGAATGCTTTTGAAAAATGCAGTGTTGAATGACTGGTCACTTAATGCTTTAAATGAAGATGAAGTTGTGAGTATACTGGAATCAGATGGATTTCCTAGGGTGCTTGCAAGGCATTGTTTGCACGTATATGGCAACAAAGTAAATGAGTGCATGCCTAGCTTTGTTTGGAAGTTGGATGAGAAGCGAGTATGCATACATTTTGCAAGAGAAATCCTGAAAGGGGGTAAGAGAAAGTTAGAGAGTTTCATGGATGAATGGAAGCAGAAGATTCCAGACGGAATGCATCCCACTTTTGATCTTGTGGAAGGAGAGGTATTAACAGAGAGACTTGGAGTTGAGACATGGGTTCGTGCCTTCAGTGTCGCATCTTTGCCTTCCACTCCAGCCGAGCGTTTCTCCATTCTTTTCAGAGAGAGGCCAAAATGGGAATGGAAAGATCTGCAGCCCTATATCAGAGATCTGAAGGTACCAGGTCTTTCTTCAGAAGGGTTGCTACTCAAATACACTCGAAGGACACAACCATCACCTGACACAGAACCAGTTTTCAGTGCAAGATAG

Predicted protein sequences of Glyma04g15890

Limit To All Plant Sequences

>Glyma04g15890.1   sequence type=predicted peptide   gene model=Glyma04g15890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESPPQLGSRGAETLKHIAPGSSISVAYHPSFGPYDDLLFLELDEKLLPDVLNERVVLRGQPDEDAVLCTLSKTYAMKFVGTSNSVLLVPPANHSEFSENPQKNDSTNDEDKVVVPVLKVVSGNMELIETAPRLDKLKLLLSEKPYKLEEDDMGNLEENQESRIGLYNWNYLVDNIQASDKELLSGLQALSALEINGYWRLVDGSYMDMILGMLLKNAVLNDWSLNALNEDEVVSILESDGFPRVLARHCLHVYGNKVNECMPSFVWKLDEKRVCIHFAREILKGGKRKLESFMDEWKQKIPDGMHPTFDLVEGEVLTERLGVETWVRAFSVASLPSTPAERFSILFRERPKWEWKDLQPYIRDLKVPGLSSEGLLLKYTRRTQPSPDTEPVFSAR*

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