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Report for Sequence Feature Glyma04g15820

Feature Type:gene_model
Chromosome:Gm04
Start:16664033
stop:16665442
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g15820
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G17600AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr5:5800029-5801117 REVERSE LENGTH=362 SoyBaseE_val: 1.00E-64ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR14155Panther RING FINGER PROTEIN 6/12/38 JGI ISS
PTHR14155:SF30Panther OS02G0692000 PROTEIN JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_D7L170UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L170_ARALL SoyBaseE_val: 2.00E-64ISS
UniRef100_I1JVY8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVY8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g15820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g15820
ParalogEvidenceComments
Glyma06g46730 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g15820 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g128100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g15820
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g15820
>Glyma04g15820.1   sequence type=CDS   gene model=Glyma04g15820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTCTATGGGTAACTCAAATCCAAATCTAAATCCAAATCCAAATCCAAATCCATGGACTCCAAAGGATTGTTCTGAAGGAATTTGCAGCATCTATTGTCCTCAGTGGTGTTACAAAGTGTACTCTCCTCCCCCTCCAATTCTACTAGGTGATGGCGATGATGACCCTTCAGGCTTTGAATTCTCTCCTCTCATAGTTGCTGTGATTGGAATCTTGGCTAGCACTTTCATCTTGGTCACTTACTATACCATTATCTCAAGGTTCTGCAGGCGCAGAAACAACACCAATGATTCAACAGAAGACGATGGAAACAGCGAATTGGCTCGAGTTTCTTCTTCTGCCAATTCTGGCTTAGATGAGGCTCTCATCAAATCCATCACGGTTTGCAAGTACAACAAACGTGGTGGTTTGGTGGAAGGTCACGATTGTTCGGTTTGTTTGAGCGAGTTTGAAGAGAATGAAGACTTGAGATTGTTGCCCAAATGCAACCATGCTTTTCATCTCCCTTGCATTGATACTTGGCTCAAGTCTCATGCCACTTGCCCTTTGTGTCGTGCTTCTGTCACCGCTTGTCCGAATCCGAATTCATCCATGGAACCGCCACCAAGAGTCATTGTTAATGCCTTGGAACACCAGCAAAGGAGTAACCATGTTGTTGTCGTTGTTGAGAGTTCCGAGGAACAAGAGAAGGTGGTTAGCTTTGATGCTCATACTTTGAGTGACGGTGAAGGGTATCACACATAA
Predicted protein sequences of Glyma04g15820
>Glyma04g15820.1   sequence type=predicted peptide   gene model=Glyma04g15820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSMGNSNPNLNPNPNPNPWTPKDCSEGICSIYCPQWCYKVYSPPPPILLGDGDDDPSGFEFSPLIVAVIGILASTFILVTYYTIISRFCRRRNNTNDSTEDDGNSELARVSSSANSGLDEALIKSITVCKYNKRGGLVEGHDCSVCLSEFEENEDLRLLPKCNHAFHLPCIDTWLKSHATCPLCRASVTACPNPNSSMEPPPRVIVNALEHQQRSNHVVVVVESSEEQEKVVSFDAHTLSDGEGYHT*






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