Glyma04g15590 - SoyBase

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Report for Sequence Feature Glyma04g15590

Feature Type:	gene_model
Chromosome:	Gm04
Start:	16474170
stop:	16477902
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g15590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G07050	AT	Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein \| chr5:2191533-2193416 REVERSE LENGTH=402	SoyBase	E_val: 0	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
UniRef100_I1KFJ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KFJ6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O24091	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MtN21 protein n=2 Tax=Medicago truncatula RepID=O24091_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g15590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g15590

Paralog	Evidence	Comments
Glyma06g46740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g15590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g127900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g15590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g15590

Limit To All Plant Sequences

>Glyma04g15590.2   sequence type=CDS   gene model=Glyma04g15590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTGAAAAGCTTAGAAGTGGTGCCAACTTCCTTGAGAACTCTAAACCCTACTTTGCCATGATTGCTTTACAATTTGGCTATGCGGGCATGAACATTATCACTAAGGTTTCCCTCAACCGTGGCATGAGCCACTATGTACTTGTTGTTTATCGCCATGCCTTTGCCACTGCTGTCGTCGCTCCATTTGCCTTCATCCTTGAAAGGAAAGCTCAACCGAGGATAAAATTCCCAATTTTCATGCAAATATTTTTCCTAGCTCTACTTGGGCCTGTGATTGATCAAAACTTCTACTATGCTGGGTTGAAATTAACCTCCCCAACCTTCTCATGTGCAATGAGCAACGTGCTTCCTGCCATGACTTTTGTTATGGCAGTATTATGCCGGATGGAGAAGATTAACATGAAGAAGGTGAGATGCCAAGCCAAGGTGGTGGGAACATTGGTGACGGTGGCTGGGACCATGTTGATGACCTTGTACAAAGGCCCTAGAGTGGAAATGGTTTGGACCAAACATGCACCTCATCATGGGCAAATCAATAATGCAACATATACCACAACATATTCAGACAAGGATTGGTTCATTGGCTCCATCCTCCTAATCATTGCCACTCTTGCCTGGGCATCCCTCTTTGTTTTACAAGCCAAAGCCATTGAAACCTACAAAAATCACCAGCTAAGCCTCACATCACTTATCTGCTTCATAGGCACTCTTCAAGCTATTGCTGTTACTTTCATAATGGAACACAAGCCATCTGTGTGGACAATTGGCTGGGATATGAACTTGCTTGCCGCTGCCTATGCTGGGATTGTTACATCAAGCATATCATACTATGTCCAAGGATTGGTAATTAAGAAGAAAGGTCCTGTTTTCGCAACTGCATTTAGCCCTCTGATGATGATCATTGTAGCCATCATGGGCTCCTTTATCCTTGCAGAGCAGATTTTTCTTGGAGGTGTGCTTGGTGCCATCTTAATCGTTTTAGGCTTATACTCAGTTCTTTGGGGAAAGCACAAAGAACAAGTGGAGAAGAACGTGGCAGACGATATACCCTTGCCTCTAAAGGGTGCTCAACTTGATGGAAACCCAGAATCACTTATTGATTCCACTGATCTGAAATCCGATTCCAACAAGGTCTCTTCACATATGATTAATGAGACTATCCCTGAGCCTCCCATGAAATCTAACAATTAA

Predicted protein sequences of Glyma04g15590

Limit To All Plant Sequences

>Glyma04g15590.2   sequence type=predicted peptide   gene model=Glyma04g15590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATEKLRSGANFLENSKPYFAMIALQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVVAPFAFILERKAQPRIKFPIFMQIFFLALLGPVIDQNFYYAGLKLTSPTFSCAMSNVLPAMTFVMAVLCRMEKINMKKVRCQAKVVGTLVTVAGTMLMTLYKGPRVEMVWTKHAPHHGQINNATYTTTYSDKDWFIGSILLIIATLAWASLFVLQAKAIETYKNHQLSLTSLICFIGTLQAIAVTFIMEHKPSVWTIGWDMNLLAAAYAGIVTSSISYYVQGLVIKKKGPVFATAFSPLMMIIVAIMGSFILAEQIFLGGVLGAILIVLGLYSVLWGKHKEQVEKNVADDIPLPLKGAQLDGNPESLIDSTDLKSDSNKVSSHMINETIPEPPMKSNN*

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