Report for Sequence Feature Glyma04g15530
Feature Type: gene_model
Chromosome: Gm04
Start: 16211961
stop: 16214411
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g15530
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G11290 AT
Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr1:3791454-3793883 REVERSE LENGTH=809
SoyBase E_val: 0 ISS
GO:0016556 GO-bp
Annotation by Michelle Graham. GO Biological Process: mRNA modification
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0004519 GO-mf
Annotation by Michelle Graham. GO Molecular Function: endonuclease activity
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24015:SF86 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_D7KMD0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KMD0_ARALL
SoyBase E_val: 0 ISS
UniRef100_UPI000233A6B7 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233A6B7 related cluster n=1 Tax=unknown RepID=UPI000233A6B7
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g15530
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g15530
Paralog Evidence Comments
Glyma06g46880 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g15530 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g127500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g15530
Coding sequences of Glyma04g15530
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g15530.1 sequence type=CDS gene model=Glyma04g15530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAGCTCTTTGCTCTATGCCCTTTACCCTTTGGGGCCAACACAAATACCAACACAAAGTACTCCAAAACTACCACAACAACAACCTCTTTCTACCAAAGTAATTCCATTCCTACCCGAGTATATAGCCATAGGCACCCTTCAGTTGTACTCTTAGAAAACTGCACTTCTAAGAAGGAGCTTTATCAAATCCTTCCCTTTATCATCAAAAACGGTTTCTACAATGAGCACTTGTTTCAGACGAAGGTTATCAGCTTGTTCTGTAAATTTGGCAGCAATAGTGAAGCAGCTCGTGTCTTTGAGCATGTTGAGCTCAAGCTCGATGTGCTTTACCACATTATGCTAAAAGGGTATGCAAAAAACTCGAGTTTAGGTGATGCCTTGTGCTTCTTCCTTAGGATGATGTGTGATGAGGTTAGACTTGTTGTGGGTGATTATGCTTGCCTGTTGCAATTGTGTGGAGAGAATTTGGACCTCAAAAAGGGTAGAGAGATTCATGGACTGATCATAACTAATGGGTTTGAGTCCAATTTGTTTGTCATGACTGCTGTTATGAGTTTATATGCCAAGTGTAGGCAGATTGATAATGCATATAAGATGTTCGAGAGAATGCAGCATAAGGATTTGGTTTCTTGGACAACATTGGTTGCAGGATATGCACAGAATGGACATGCAAAGAGAGCATTGCAGTTGGTTTTGCAGATGCAGGAAGCTGGCCAAAAGCCTGATTCTGTCACGTTGGTCAGTATTTTACCGGCGGTTGCAGATATGAAGGCTTTGAGAATTGGAAGGTCTATTCATGGTTATGCTTTCAGATCAGGATTTGAATCACTGGTTAATGTTACAAATGCACTTCTTGATATGTACTTCAAATGTGGGTCTGCAAGGATTGCAAGGTTGGTTTTTAAGGGGATGAGGAGTAAGACTGTTGTTTCATGGAATACCATGATTGATGGTTGTGCCCAAAATGGTGAATCTGAAGAAGCCTTTGCAACTTTTCTAAAGATGTTGGATGAAGGGGAGGTACCTACACGTGTTACAATGATGGGAGTTTTACTTGCTTGCGCTAATTTGGGTGATCTTGAAAGAGGGTGGTTTGTTCATAAATTATTGGACAAGCTGAAACTTGATTCTAATGTGTCAGTAATGAACTCTTTAATATCCATGTATTCTAAATGCAAGAGAGTTGATATAGCAGCCTCGATATTTAACAATTTGGAGAAAACAAATGTCACTTGGAATGCCATGATATTAGGCTACGCACAAAATGGGTGTGTGAAGGAGGCTTTAAATCTATTCTGTATGATGCAATCTCAAGGCATTAAACTTGATTGTTTTACTTTAGTTGGTGTAATTACTGCTCTTGCAGATTTCTCAGTCAACCGCCAGGCTAAGTGGATTCATGGACTTGCAGTAAGAGCTTGTATGGACAACAATGTCTTTGTTTCCACTGCTCTTGTGGACATGTATGCAAAATGTGGAGCCATCAAAACTGCAAGAAAGCTTTTCGACATGATGCAAGAGAGACATGTGATAACATGGAATGCAATGATAGATGGATATGGGACACATGGCGTAGGGAAAGAAACTCTAGATCTCTTCAATGAGATGCAGAAGGGAGCTGTTAAGCCAAATGATATAACATTTTTGTCTGTAATTTCAGCTTGTAGTCACTCAGGTTTTGTGGAAGAAGGTCTCTTGCTCTTCAAAAGCATGCAGGAAGATTATTACTTGGAGCCTACTATGGATCACTATAGTGCCATGGTTGATCTCCTTGGTCGTGCTGGCCAGCTAGATGATGCTTGGAATTTCATCCAAGAGATGCCCATCAAACCAGGGATTTCTGTTCTAGGTGCAATGTTGGGTGCTTGCAAAATCCATAAAAATGTAGAATTGGGAGAGAAGGCTGCACAAAAACTATTTAAGTTAGACCCCGATGAGGGAGGGTATCATGTGTTGCTTGCCAATATTTATGCCTCTAATTCAATGTGGGATAAAGTAGCCAAGGTGAGAACAGCCATGGAAGATAAGGGGCTCCACAAAACTCCAGGCTGCAGTTGGGTGGAGTTGAGAAATGAAATTCATACATTCTACTCAGGAAGTACTAATCATCCAGAATCCAAAAAAATTTATGCTTTTCTTGAGACTCTTGGAGATGAGATAAAAGCTGCAGGTTATGTACCTGACCCCGATTCAATTCATGATGTGGAAGAAGACGTGAAGAAACAATTGCTCAGTAGCCATAGTGAAAGGCTTGCTATTGCATTTGGACTTTTGAATACAAGCCCTGGCACAACATTACACATTAGAAAAAATCTTAGAGTTTGTGGTGATTGCCATGATACCACTAAGTACATTTCACTTGTGACAGGGAGAGAAATTATAGTTCGTGATTTACGTAGGTTTCATCATTTTAAGAATGGAAGCTGTTCTTGTGGGGATTACTGGTGA
Predicted protein sequences of Glyma04g15530
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g15530.1 sequence type=predicted peptide gene model=Glyma04g15530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQLFALCPLPFGANTNTNTKYSKTTTTTTSFYQSNSIPTRVYSHRHPSVVLLENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPDSIHDVEEDVKKQLLSSHSERLAIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKNGSCSCGDYW*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
