Glyma04g15520 - SoyBase

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Report for Sequence Feature Glyma04g15520

Feature Type:	gene_model
Chromosome:	Gm04
Start:	16210607
stop:	16211577
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g15520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02550	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 370 Blast hits to 300 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 354; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). \| chr4:1120622-1121629 REVERSE LENGTH=307	SoyBase	E_val: 4.00E-116	ISS
GO:0010286	GO-bp	Annotation by Michelle Graham. GO Biological Process: heat acclimation	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1JVY2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVY2_SOYBN	SoyBase	E_val: 5.00E-174	ISS

Expression Patterns of Glyma04g15520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g15520

Paralog	Evidence	Comments
Glyma06g46894	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g15520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g127400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g15520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g15520

Limit To All Plant Sequences

>Glyma04g15520.2   sequence type=CDS   gene model=Glyma04g15520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCGCTATGATCTGCAAAGACAAAGAAGGGATATGAAAAAGAAAGGAAGGAATGTTGTGTGGTCAATTGCGATGGACAAGTGTCTGATTGAAGCCCTGGCAGCTCAGGCAAGAAGTGGAAACAAAATTGACAAATGTTTCAATGAAAATGCATACATGGCTGCCTGTGTTGCGGTAAACACTTGCTTCAACTTGAATTTGAATAATCAGAAAGTTATCAACCGGTTGAAAACAATTAAGAAGAGGTATAAAGTAATAAAAGATATCTTAAGTCAGAATGGTTTCTGGTGGAACCCAAATACAGAGATGATTGAGTGTGACAGTGATGAGATTTGGAAGAATTATGTTGCTGCACATCCCGATGCGAAAGGATTCCATGGAAAGCAGATAGAGATATATGATGAACTTAAATTGTTTGCGATGAAGAGTGGAACTCAGCTAATGGACATGAAGAATTGTGACAATGAATCAGCCTCCTTTGTTTCTCCCAATTCAGAAGACATGAGTGGTACAGATGGAACTGAATCATACACTGCAACTCCAGAACTAGGCCAGATGCTAGATGCATTGATGACAGTAGCATCAAGCATCCGACATTTGGTTGATGCCATGGAGCAAAGCAAATGCTCATTTGATGCAAGTGAGCTATTACAGGCTGTGATGGAGATAGATGGGTTGGAAGAGGGTAAACAGATGTATGCATTTGAATATTTAAATGCTGATCCTGCCAAAGCCAGAGCCTTCCTCACATACAATGCTAGGATGAGAAAGACATATCTGTTTAGACAGTTCTGGTGGTGGAGGTGA

Predicted protein sequences of Glyma04g15520

Limit To All Plant Sequences

>Glyma04g15520.2   sequence type=predicted peptide   gene model=Glyma04g15520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERYDLQRQRRDMKKKGRNVVWSIAMDKCLIEALAAQARSGNKIDKCFNENAYMAACVAVNTCFNLNLNNQKVINRLKTIKKRYKVIKDILSQNGFWWNPNTEMIECDSDEIWKNYVAAHPDAKGFHGKQIEIYDELKLFAMKSGTQLMDMKNCDNESASFVSPNSEDMSGTDGTESYTATPELGQMLDALMTVASSIRHLVDAMEQSKCSFDASELLQAVMEIDGLEEGKQMYAFEYLNADPAKARAFLTYNARMRKTYLFRQFWWWR*

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