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Report for Sequence Feature Glyma04g15456

Feature Type:gene_model
Chromosome:Gm04
Start:16082045
stop:16086706
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g15456
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G23180AT Annotation by Michelle Graham. TAIR10: cysteine-rich RLK (RECEPTOR-like protein kinase) 10 | chr4:12138171-12140780 FORWARD LENGTH=669 SoyBaseE_val: 4.00E-172ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0006995GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF430Panther SUBFAMILY NOT NAMED JGI ISS
PF01657PFAM Domain of unknown function DUF26 JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
UniRef100_G7ZZG1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7ZZG1_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233D791UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D791 related cluster n=1 Tax=unknown RepID=UPI000233D791 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g15456
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g15456 not represented in the dataset
Glyma04g15456 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g15456
ParalogEvidenceComments
Glyma06g46910 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g15456 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g127100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g15456
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g15456
>Glyma04g15456.2   sequence type=transcript   gene model=Glyma04g15456   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAATGTGAGAAATTTCTATCCTACCTGGCCCAGCCCCACCTACACGCTTCCTAATATATGAACGGAGCTATTTCATAGTGAACAATGTTAATAAATAAATTAACATTGTGAACGGTCAAAAGATTTATGCTACAAGCTGCCACTTTAGCAGGATCTCAGAACATTAAAATGTGCATGGTACATCAATGTCAAAACATTAGACAAATTGATCATATATTACTTTGAAATCTGGGGCCTCTAACGCACTAGCCTCACATAAATTATATGTTGATCATACACAGCGGTGATTGCAGCAAAAGAAGAATGGTTTATCAATGGTTTTTTATTATCAAATTCATGTGCCTTCTTTGCTTCGTTGCTGGTCAGAACAGTAGCAATACACAACCACTTGATTATAGATATGCTTGTTTGGACCAAACTTCTGTTCCTCCTTCTACTACATACCAAACCAATCTCGACGATTTGATCTCTTCCCTCTCATCTGATTCTGCTACCAGCAATGGTTTTGGGAATGGAACTTCAGGTATTGATGAAAACATGGTTTATGGACTCTATCTTTGTCGTGGCGATGTGAACACCAGCCTTTGCCACTCATGTGTTCAAAACTCTAGCATATTGCTCAAGCAGCACTGCCCCAACACTGCCTCAGCTATTTTGTGGTACCCCTTTTGTCTTCTGAGGTACTCAAACCAGAATTTCTTTGGCAACCTCACCTTAACGCCTAGGATTCCGATGTTTGACGCCACGCAAAATTTTACTAGTGCTGGAGAGTTTGACAGTGATGCCAGGGTTTTGATGAATGGTTTAATACAAATGGGGTCAGAGGAACCCTTGATGTTTGGGACACATATGTTCAATATAAATGGCACTCAAAGAAGGTATGGTTGGGTACAGTGCAGCAGAGATATTACAACTGAGGAATGCAGAACATGTTTGAGCAATATGCTTGAAGATGTTGAGAATTGCTGTGAGGAGAAGAAGGTGTGGCGTGTCTTTTCTCCAAGTTGTATTGTGATGTATGAAACTCAGCCATTTTTTTTGAATGGAACTTCTGAGCCAACGCCTCAGCAAGACGAAGATGGGGATAACAGAAGGTGGTTGATTATAGTAATCATTTCTGTATCTGGAGTTGTGGTAGTAGCTCTATTGTCTATCAGCACATACTACTTCTGGTGTTTGAAATGGAAAAAAGCTATTCAAGAGGATGGACTAAATTCAATGTTTTCTCAAGATCAAACGGACAAGGAGGAGAGTATGAATGCTGACCTTCCTATGATGCCTCTGAGTACTATTCTAAAAAGTACAAATAATTTTTCTGATGAGCATAAACTAGGGAAAGGTGGATTTGGCCCTGTCTATAAGGGAGTTTTACCAGATGGAAGGCAAATTGCTGTTAAAAGGCTTTCAAAAACTTCTGTTCAAGGTGTGGAGGAATTCAAAAATGAAGTAATATTGATAGCAAAATTACAGCATCGCAACCTTGTGAGACTGTTGGCTTGCTGCATTGAGCAAAATGAAAAGCTTCTTGTCTATGAATTCATGCCAAATTCAAGCCTTGATTTCCACTTATTTGATATGGAGAAGGGTGAACATCTGGAATGGAAAAACCGATTAAACATTATTAATGGGATTGCTAAAGGGCTTCTATATCTACATGAAGACTCTAGGCTAAGGGTTATTCACAGAGACCTGAAAGCTAGTAACATTCTATTAGATCATGAAATGAATCCAAAAATTTCAGACTTTGGATTGGCAAGAACATTTGGAGGAGACCAGAAGCAGGCAAATACAATTAGAGTTGTGGGAACTTATGGATACATGGCTCCTGAGTATGCTATGGAAGGCTTGTTTTCAGTAAAGTCAGATGTTTTCAGCTTTGGTGTTCTTTTGTTAGAGATCATCAGTGGAAAAAGGAGTAGTAAATTCTATCTGTCAGACCAAGGCCAAAGCCTTCTCATATATGCATGGAACCTCTGGTGTGAGAGGAAAGGTTTGGAATTGATGGATCCAATAATAGAAAAGTCATGCGTACGTAGTGAAGTTCTGAAGTGTATGCACATTGGACTATTGTGTGTACAAGAAGATGCAGCAGATAGACCAAAAATGTCAAGTGTTGTTCATATGCTTGCAAGTGACACAGTGAGTCTTTCCGTCCCCACACGCCCTGCATTTTCTGTTGGAAGAGCTGTCACTGAACGCGAGTGTTCATCAAACACTTCTATGCATTACTCTGTCAATGAAGCAACAGTCTCTGAAGTGATACCAAGGTGACAAATAGAACTGGACATGCTTTTCTTCTTAGCTTTTGTAGGATGCAGGAATTCTGTGTATAAGTTACCTAAAGACAGAAGATTAACATATTTTTAGGAAGATGAAATAATTTTTTGGTGTATAAAAATGATCGAGTTTCGGAAAGTATACTTTGGCTTAATTGTATTTATTATCATGGGTGATGTTCTGTTTTTTTTTTTTTTTTTTTTTATGGTAATCACCTTAACCAAGGTCTTTAGCTTTAGTTTTTGGTGAGACTATGAGGTATTCCGATCTTGTAAGCTTTGGTACTTTAGATTGACTATGAGATTAATCTTTATTCCCTCTCCACGAATGATGATGGGTCATGTACTCATTATTTGAACATCAAGTTGTCTTCAGATAGAGCAATCGATCTCTCCCATCTGTCTCTTCCATAGGAATGGATTCTCTGCAATGACATTATCACTATATGAGATCCTAGTCCTTCAATGAATTTTATCAATGTAATATATTTCTACAATAAAGGTGAGATTTAGTAAAATAAACAGAGGTTTTAACACAACTATCTCAAGTTTTTT
Coding sequences of Glyma04g15456
>Glyma04g15456.1   sequence type=CDS   gene model=Glyma04g15456   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGATCATACACAGCGGTGATTGCAGCAAAAGAAGAATGGTTTATCAATGGTTTTTTATTATCAAATTCATGTGCCTTCTTTGCTTCGTTGCTGGTCAGAACAGTAGCAATACACAACCACTTGATTATAGATATGCTTGTTTGGACCAAACTTCTGTTCCTCCTTCTACTACATACCAAACCAATCTCGACGATTTGATCTCTTCCCTCTCATCTGATTCTGCTACCAGCAATGGTTTTGGGAATGGAACTTCAGGTATTGATGAAAACATGGTTTATGGACTCTATCTTTGTCGTGGCGATGTGAACACCAGCCTTTGCCACTCATGTGTTCAAAACTCTAGCATATTGCTCAAGCAGCACTGCCCCAACACTGCCTCAGCTATTTTGTGGTACCCCTTTTGTCTTCTGAGGTACTCAAACCAGAATTTCTTTGGCAACCTCACCTTAACGCCTAGGATTCCGATGTTTGACGCCACGCAAAATTTTACTAGTGCTGGAGAGTTTGACAGTGATGCCAGGGTTTTGATGAATGGTTTAATACAAATGGGGTCAGAGGAACCCTTGATGTTTGGGACACATATGTTCAATATAAATGGCACTCAAAGAAGGTATGGTTGGGTACAGTGCAGCAGAGATATTACAACTGAGGAATGCAGAACATGTTTGAGCAATATGCTTGAAGATGTTGAGAATTGCTGTGAGGAGAAGAAGGTGTGGCGTGTCTTTTCTCCAAGTTGTATTGTGATGTATGAAACTCAGCCATTTTTTTTGAATGGAACTTCTGAGCCAACGCCTCAGCAAGACGAAGATGGGGATAACAGAAGGTGGTTGATTATAGTAATCATTTCTGTATCTGGAGTTGTGGTAGTAGCTCTATTGTCTATCAGCACATACTACTTCTGGTGTTTGAAATGGAAAAAAGACAAACAAGCTATTCAAGAGGATGGACTAAATTCAATGTTTTCTCAAGATCAAACGGACAAGGAGGAGAGTATGAATGCTGACCTTCCTATGATGCCTCTGAGTACTATTCTAAAAAGTACAAATAATTTTTCTGATGAGCATAAACTAGGGAAAGGTGGATTTGGCCCTGTCTATAAGGGAGTTTTACCAGATGGAAGGCAAATTGCTGTTAAAAGGCTTTCAAAAACTTCTGTTCAAGGTGTGGAGGAATTCAAAAATGAAGTAATATTGATAGCAAAATTACAGCATCGCAACCTTGTGAGACTGTTGGCTTGCTGCATTGAGCAAAATGAAAAGCTTCTTGTCTATGAATTCATGCCAAATTCAAGCCTTGATTTCCACTTATTTGATATGGAGAAGGGTGAACATCTGGAATGGAAAAACCGATTAAACATTATTAATGGGATTGCTAAAGGGCTTCTATATCTACATGAAGACTCTAGGCTAAGGGTTATTCACAGAGACCTGAAAGCTAGTAACATTCTATTAGATCATGAAATGAATCCAAAAATTTCAGACTTTGGATTGGCAAGAACATTTGGAGGAGACCAGAAGCAGGCAAATACAATTAGAGTTGTGGGAACTTATGGATACATGGCTCCTGAGTATGCTATGGAAGGCTTGTTTTCAGTAAAGTCAGATGTTTTCAGCTTTGGTGTTCTTTTGTTAGAGATCATCAGTGGAAAAAGGAGTAGTAAATTCTATCTGTCAGACCAAGGCCAAAGCCTTCTCATATATGCATGGAACCTCTGGTGTGAGAGGAAAGGTTTGGAATTGATGGATCCAATAATAGAAAAGTCATGCGTACGTAGTGAAGTTCTGAAGTGTATGCACATTGGACTATTGTGTGTACAAGAAGATGCAGCAGATAGACCAAAAATGTCAAGTGTTGTTCATATGCTTGCAAGTGACACAGTGAGTCTTTCCGTCCCCACACGCCCTGCATTTTCTGTTGGAAGAGCTGTCACTGAACGCGAGTGTTCATCAAACACTTCTATGCATTACTCTGTCAATGAAGCAACAGTCTCTGAAGTGATACCAAGGTGA

>Glyma04g15456.2   sequence type=CDS   gene model=Glyma04g15456   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGATCATACACAGCGGTGATTGCAGCAAAAGAAGAATGGTTTATCAATGGTTTTTTATTATCAAATTCATGTGCCTTCTTTGCTTCGTTGCTGGTCAGAACAGTAGCAATACACAACCACTTGATTATAGATATGCTTGTTTGGACCAAACTTCTGTTCCTCCTTCTACTACATACCAAACCAATCTCGACGATTTGATCTCTTCCCTCTCATCTGATTCTGCTACCAGCAATGGTTTTGGGAATGGAACTTCAGGTATTGATGAAAACATGGTTTATGGACTCTATCTTTGTCGTGGCGATGTGAACACCAGCCTTTGCCACTCATGTGTTCAAAACTCTAGCATATTGCTCAAGCAGCACTGCCCCAACACTGCCTCAGCTATTTTGTGGTACCCCTTTTGTCTTCTGAGGTACTCAAACCAGAATTTCTTTGGCAACCTCACCTTAACGCCTAGGATTCCGATGTTTGACGCCACGCAAAATTTTACTAGTGCTGGAGAGTTTGACAGTGATGCCAGGGTTTTGATGAATGGTTTAATACAAATGGGGTCAGAGGAACCCTTGATGTTTGGGACACATATGTTCAATATAAATGGCACTCAAAGAAGGTATGGTTGGGTACAGTGCAGCAGAGATATTACAACTGAGGAATGCAGAACATGTTTGAGCAATATGCTTGAAGATGTTGAGAATTGCTGTGAGGAGAAGAAGGTGTGGCGTGTCTTTTCTCCAAGTTGTATTGTGATGTATGAAACTCAGCCATTTTTTTTGAATGGAACTTCTGAGCCAACGCCTCAGCAAGACGAAGATGGGGATAACAGAAGGTGGTTGATTATAGTAATCATTTCTGTATCTGGAGTTGTGGTAGTAGCTCTATTGTCTATCAGCACATACTACTTCTGGTGTTTGAAATGGAAAAAAGCTATTCAAGAGGATGGACTAAATTCAATGTTTTCTCAAGATCAAACGGACAAGGAGGAGAGTATGAATGCTGACCTTCCTATGATGCCTCTGAGTACTATTCTAAAAAGTACAAATAATTTTTCTGATGAGCATAAACTAGGGAAAGGTGGATTTGGCCCTGTCTATAAGGGAGTTTTACCAGATGGAAGGCAAATTGCTGTTAAAAGGCTTTCAAAAACTTCTGTTCAAGGTGTGGAGGAATTCAAAAATGAAGTAATATTGATAGCAAAATTACAGCATCGCAACCTTGTGAGACTGTTGGCTTGCTGCATTGAGCAAAATGAAAAGCTTCTTGTCTATGAATTCATGCCAAATTCAAGCCTTGATTTCCACTTATTTGATATGGAGAAGGGTGAACATCTGGAATGGAAAAACCGATTAAACATTATTAATGGGATTGCTAAAGGGCTTCTATATCTACATGAAGACTCTAGGCTAAGGGTTATTCACAGAGACCTGAAAGCTAGTAACATTCTATTAGATCATGAAATGAATCCAAAAATTTCAGACTTTGGATTGGCAAGAACATTTGGAGGAGACCAGAAGCAGGCAAATACAATTAGAGTTGTGGGAACTTATGGATACATGGCTCCTGAGTATGCTATGGAAGGCTTGTTTTCAGTAAAGTCAGATGTTTTCAGCTTTGGTGTTCTTTTGTTAGAGATCATCAGTGGAAAAAGGAGTAGTAAATTCTATCTGTCAGACCAAGGCCAAAGCCTTCTCATATATGCATGGAACCTCTGGTGTGAGAGGAAAGGTTTGGAATTGATGGATCCAATAATAGAAAAGTCATGCGTACGTAGTGAAGTTCTGAAGTGTATGCACATTGGACTATTGTGTGTACAAGAAGATGCAGCAGATAGACCAAAAATGTCAAGTGTTGTTCATATGCTTGCAAGTGACACAGTGAGTCTTTCCGTCCCCACACGCCCTGCATTTTCTGTTGGAAGAGCTGTCACTGAACGCGAGTGTTCATCAAACACTTCTATGCATTACTCTGTCAATGAAGCAACAGTCTCTGAAGTGATACCAAGGTGA
Predicted protein sequences of Glyma04g15456
>Glyma04g15456.1   sequence type=predicted peptide   gene model=Glyma04g15456   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLIIHSGDCSKRRMVYQWFFIIKFMCLLCFVAGQNSSNTQPLDYRYACLDQTSVPPSTTYQTNLDDLISSLSSDSATSNGFGNGTSGIDENMVYGLYLCRGDVNTSLCHSCVQNSSILLKQHCPNTASAILWYPFCLLRYSNQNFFGNLTLTPRIPMFDATQNFTSAGEFDSDARVLMNGLIQMGSEEPLMFGTHMFNINGTQRRYGWVQCSRDITTEECRTCLSNMLEDVENCCEEKKVWRVFSPSCIVMYETQPFFLNGTSEPTPQQDEDGDNRRWLIIVIISVSGVVVVALLSISTYYFWCLKWKKDKQAIQEDGLNSMFSQDQTDKEESMNADLPMMPLSTILKSTNNFSDEHKLGKGGFGPVYKGVLPDGRQIAVKRLSKTSVQGVEEFKNEVILIAKLQHRNLVRLLACCIEQNEKLLVYEFMPNSSLDFHLFDMEKGEHLEWKNRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDHEMNPKISDFGLARTFGGDQKQANTIRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGKRSSKFYLSDQGQSLLIYAWNLWCERKGLELMDPIIEKSCVRSEVLKCMHIGLLCVQEDAADRPKMSSVVHMLASDTVSLSVPTRPAFSVGRAVTERECSSNTSMHYSVNEATVSEVIPR*

>Glyma04g15456.2   sequence type=predicted peptide   gene model=Glyma04g15456   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLIIHSGDCSKRRMVYQWFFIIKFMCLLCFVAGQNSSNTQPLDYRYACLDQTSVPPSTTYQTNLDDLISSLSSDSATSNGFGNGTSGIDENMVYGLYLCRGDVNTSLCHSCVQNSSILLKQHCPNTASAILWYPFCLLRYSNQNFFGNLTLTPRIPMFDATQNFTSAGEFDSDARVLMNGLIQMGSEEPLMFGTHMFNINGTQRRYGWVQCSRDITTEECRTCLSNMLEDVENCCEEKKVWRVFSPSCIVMYETQPFFLNGTSEPTPQQDEDGDNRRWLIIVIISVSGVVVVALLSISTYYFWCLKWKKAIQEDGLNSMFSQDQTDKEESMNADLPMMPLSTILKSTNNFSDEHKLGKGGFGPVYKGVLPDGRQIAVKRLSKTSVQGVEEFKNEVILIAKLQHRNLVRLLACCIEQNEKLLVYEFMPNSSLDFHLFDMEKGEHLEWKNRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDHEMNPKISDFGLARTFGGDQKQANTIRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGKRSSKFYLSDQGQSLLIYAWNLWCERKGLELMDPIIEKSCVRSEVLKCMHIGLLCVQEDAADRPKMSSVVHMLASDTVSLSVPTRPAFSVGRAVTERECSSNTSMHYSVNEATVSEVIPR*






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