Report for Sequence Feature Glyma04g15330
Feature Type: gene_model
Chromosome: Gm04
Start: 15984332
stop: 15987482
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g15330
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G10800 AT
Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT3G05675.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr4:6643678-6644529 FORWARD LENGTH=283
SoyBase E_val: 2.00E-85 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_B9RYR3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RYR3_RICCO
SoyBase E_val: 2.00E-126 ISS
UniRef100_C6T873 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T873_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g15330
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g15330
Paralog Evidence Comments
Glyma06g46950 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g15330 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g126600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g15330
Coding sequences of Glyma04g15330
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g15330.1 sequence type=CDS gene model=Glyma04g15330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCAAAAATACCTAACATCAAAGCAGGAGGCGTAAGTACTACAAAAGATATATTTGTTTCAGCTGTTCGTTTTGCCGTGTCTATTGAGGGACCATGTTTTCCATTTGGAGATGAGCTGCGAATCTCTGCTCAAGAGCAAATTGACTACATGCTAGGAGAAGATGGAGATACTACTATCATCATGTCTGATGATGAAGTACAATCAGTAGTAAGAATGGGTTTTTATAACATCATTCATTCATTTGAAATGGATTTGTCTTCCTTGCTTTTGGGCACTACCCTTGAGCTTGAGGGTGTGTATGATAGGATAATGAAAAGGGTATCTGATCTTGAATGGATGTGTAATGTACTCCCAAAGATGGATTTAATGAAGAATTTTGTTTCCGACTGGTCGGCAATCTCAAGCAAAATTTTGGGGATCATTGAAGACAAGAAGCTTGACCATGTCATGTGGGGGCTGAAAGTGAAATTGATAGAAGTAGCATGTAAAGTTTTGGAAGCAGTTGGTTATGGTAGCGTGATTCTTCCAGCTCCGTGTCGGGTGCAATTGCTAAAGACCTGGTTTCCATATGTTCGGAAGATGAAGCCTTTATTGGATTCAAAAGCCGTTGAGGAAACTGGTTTTCCTTACAAAATGGATGAAGATTTGTGTCAGGCCATTGAGGGAGCAATTGTGTCACTGATATTGACGTTGCCATCAAATGATCAAGCAGACATTTTGGCAGACTGGATTAAAAGCCGGGAAGTTGGATATCCTGACTTGAGCGAGGCTTTTGAGGTATGGTGTTATCGAACCAAATCTGCCAAAAGGAGATTAGTCGAAGATTTAGATGGCCAAAGTGATGCTGCTGTCAGCCCTTGA
Predicted protein sequences of Glyma04g15330
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g15330.1 sequence type=predicted peptide gene model=Glyma04g15330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSKIPNIKAGGVSTTKDIFVSAVRFAVSIEGPCFPFGDELRISAQEQIDYMLGEDGDTTIIMSDDEVQSVVRMGFYNIIHSFEMDLSSLLLGTTLELEGVYDRIMKRVSDLEWMCNVLPKMDLMKNFVSDWSAISSKILGIIEDKKLDHVMWGLKVKLIEVACKVLEAVGYGSVILPAPCRVQLLKTWFPYVRKMKPLLDSKAVEETGFPYKMDEDLCQAIEGAIVSLILTLPSNDQADILADWIKSREVGYPDLSEAFEVWCYRTKSAKRRLVEDLDGQSDAAVSP*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
