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Report for Sequence Feature Glyma04g15306

Feature Type:gene_model
Chromosome:Gm04
Start:15956409
stop:15971276
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g15306
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G34660AT Annotation by Michelle Graham. TAIR10: multidrug resistance-associated protein 2 | chr2:14603267-14612387 FORWARD LENGTH=1623 SoyBaseE_val: 0ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0000325GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
GO:0042626GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances SoyBaseN/AISS
KOG0057 KOG Mitochondrial Fe/S cluster exporter, ABC superfamily JGI ISS
PTHR24223Panther FAMILY NOT NAMED JGI ISS
PTHR24223:SF27Panther SUBFAMILY NOT NAMED JGI ISS
PF00005PFAM ABC transporter JGI ISS
PF00664PFAM ABC transporter transmembrane region JGI ISS
UniRef100_G7ZZF0UniRef Annotation by Michelle Graham. Most informative UniRef hit: ABC transporter C family member n=1 Tax=Medicago truncatula RepID=G7ZZF0_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KFL1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KFL1_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g15306
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g15306 not represented in the dataset
Glyma04g15306 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g15306 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g126500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g15306
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g15306
>Glyma04g15306.1   sequence type=CDS   gene model=Glyma04g15306   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAGATAAAATCCTCCAGGCTCCTATGGTATTCTTCCAAACTAATCCAGTTGGCCGCATAATTAATAGGTTTGCAAAAGATACGGGAGATATAGATACCAATGTTTTTAATTTGGTGAACATGTTTTTGGGGCAAGTCTGGCAACTACTTTCGATATTTGTTCTTATAGGCACAGTGAGCACTATTTCCTTGTGGGCTATTATGCCACTTCTGATCTTCTTTTATGCAGCTTATCTATATTACCAGAGCACAGCTCGAGAGGTAAAGCGCATGGATTCCATTACAAGATCTCCTGTTTATGCACATTTTGGTGAATCACTGAATGGTTTGTCAAGCATTTGTGCTTATAAAGCATATGACAGAATGGCACACATTAATGGAAAATTCATGGATAACAACATCAGATTTACTCTTGTGAATATTAGTTCAAATCTTTGGCTCACCATAAGGCTAGAAACATTAGGAGGCCTCATGATTTGGTTGATAGCAACATCTGCTGTCTTGCAGAATGCAAGAGCTGCAAACCAGGCAATGTTTGCATCTACAATGGGTTTACTTCTCAGTTATACTTTGAACATAACAAATCTCTTGAGTGGTGTACTCAGACAAGCAAGTAGAGCTGAAAACAGTTTAAATTCTGTTGAGCGTGTCGACACATACATAAATTTAGAAACTGAGGCTCCTGGTGTAATTGAGACAAACCGTCCACCACCAGGATGGCCAACATCAGGATCAATTGAGTTTGAGGATGTTGTTCTGAGATACCGGCCGGAACTTCCTCCAGTGCTGCATGGATTGTCCTTTACAGTACCTCCAACTGAGAAGATAGGGGTAGTTGGAAGAACTGGGGCAGGAAAATCTAGCATGCTTAATGCATTATTCCGGATTGTGGAACTTCAGAAAGGAAAAATCATTATTGATGGTTGTGATATTTCTACATTCGGACTAGAAGATGTTCGAAAAGTTCTTACTATCATACCACAATCTCCAGTTCTTTTCTCTGGAACTGTTCGTTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACCTATGGCAAGCTTTAGAGAGGGCACATTTGAAGGATGTAATAAGAAGAAATCCATTTGGTCTAGATGCTCAGGTTTCAGAGGGAGGAGACAATTTCAGTGTTGGACAGAGGCAACTGCTAAGTCTAGCTAGAGCATTGCTACGAAGATCAAAGGTTCTTGTCCTGGATGAAGCTACTGCTGCTGTAGAAGTTAGAACTGATGCCCTTATACAGAAAACTATCAGACAAGAATTTCAGTCCTGCACAATGCTCATCATTGCACACAGACTAAATACAATCATTGACTGCAATCGGATTCTGCTGCTCAATGCTGGCCGAGTCCTTGAATATAGTTCTCCAGAGGAACTCTTACAAAATGAAGGAACAGCTTTCTACAAGATGGTTCAAAGTACTGGACCTGAAAATGCTCAGTATTTATGTAGCCTAGTATTTGGAAAGACAGAGAATAACTCAAATGAATATAACAAGGAGTTGGAAAACCATGTGAGACAATTAGCTTCTTCTCGCTGGACTGCTGCTACTCAGTTTGCTATAGTTGCTACCCTTTCTTCATTAAGCCATCACCTTCAAAAGCCAAGTAGTGAAGACAATAAAGATATCCTTGATAAAACAAAGGATGCAATTATAACACTTCAAGAAGTTCTAGTGGGGAAGCATGATGAAGACATAGAAGAGACACTGTATAAATACCATATTCCTACAGATAGATGGTGGTCTACCCTCTGTAAAGTTATTGAAGGTCTTGCTCTCTTGAAGGGGCTGCCTCTAGACAACATTCAACATCTAGAACTTGATTTTGAAGGGAGATCTTTTGACTAA
Predicted protein sequences of Glyma04g15306
>Glyma04g15306.1   sequence type=predicted peptide   gene model=Glyma04g15306   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLDKILQAPMVFFQTNPVGRIINRFAKDTGDIDTNVFNLVNMFLGQVWQLLSIFVLIGTVSTISLWAIMPLLIFFYAAYLYYQSTAREVKRMDSITRSPVYAHFGESLNGLSSICAYKAYDRMAHINGKFMDNNIRFTLVNISSNLWLTIRLETLGGLMIWLIATSAVLQNARAANQAMFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNSVERVDTYINLETEAPGVIETNRPPPGWPTSGSIEFEDVVLRYRPELPPVLHGLSFTVPPTEKIGVVGRTGAGKSSMLNALFRIVELQKGKIIIDGCDISTFGLEDVRKVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWQALERAHLKDVIRRNPFGLDAQVSEGGDNFSVGQRQLLSLARALLRRSKVLVLDEATAAVEVRTDALIQKTIRQEFQSCTMLIIAHRLNTIIDCNRILLLNAGRVLEYSSPEELLQNEGTAFYKMVQSTGPENAQYLCSLVFGKTENNSNEYNKELENHVRQLASSRWTAATQFAIVATLSSLSHHLQKPSSEDNKDILDKTKDAIITLQEVLVGKHDEDIEETLYKYHIPTDRWWSTLCKVIEGLALLKGLPLDNIQHLELDFEGRSFD*






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