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Report for Sequence Feature Glyma04g15260

Feature Type:gene_model
Chromosome:Gm04
Start:15918397
stop:15918846
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g15260
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G03250AT Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein | chr4:1425050-1427744 FORWARD LENGTH=507 SoyBaseE_val: 1.00E-50ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
KOG0484 KOG Transcription factor PHOX2/ARIX, contains HOX domain JGI ISS
PTHR24326Panther FAMILY NOT NAMED JGI ISS
PTHR24326:SF77Panther HOMEOBOX TRANSCRIPTION FACTOR, PUTATIVE JGI ISS
PF00046PFAM Homeobox domain JGI ISS
UniRef100_F4JI72UniRef Annotation by Michelle Graham. Most informative UniRef hit: Homeobox-leucine zipper family protein n=2 Tax=Arabidopsis thaliana RepID=F4JI72_ARATH SoyBaseE_val: 7.00E-48ISS
UniRef100_I1M740UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M740_SOYBN SoyBaseE_val: 1.00E-79ISS

Expression Patterns of Glyma04g15260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g15260 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma04g15260
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g15260
>Glyma04g15260.1   sequence type=CDS   gene model=Glyma04g15260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATAAAGTCTCCAATGAGAAAAATAAGAAAAGAAAGCTGAAAACACCGGCCCAGCTTAAGGCCTTGGAGAATTTTTATAATGAGCACAAATACCCCACAGAGGAAATGAAATTAGTACTTGCTGAGGAGTTAGGATTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGATTGATGAAAGATGAAGCTGTTGCTAATGGGCGACAAGATCGTTCAAGTGGTGTCATCCAAGATCGTGGCAGTGGACTTGGGCAAGATTCATGCGGAAGCAGTAAGCATGCTGATCACAGGTATCTGGATCCTAAGGAGGTTGAGAGCCATGGCCTCTACAATCACGAA
Predicted protein sequences of Glyma04g15260
>Glyma04g15260.1   sequence type=predicted peptide   gene model=Glyma04g15260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
NKVSNEKNKKRKLKTPAQLKALENFYNEHKYPTEEMKLVLAEELGLTEKQISGWFCHRRLKDKRLMKDEAVANGRQDRSSGVIQDRGSGLGQDSCGSSKHADHRYLDPKEVESHGLYNHE






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