Report for Sequence Feature Glyma04g15190
Feature Type: gene_model
Chromosome: Gm04
Start: 15759653
stop: 15760218
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g15190
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G26140 AT
Annotation by Michelle Graham. TAIR10: beta-galactosidase 12 | chr4:13243219-13247823 REVERSE LENGTH=728
SoyBase E_val: 9.00E-25 ISS
GO:0005975 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process
SoyBase N/A ISS
GO:0005990 GO-bp
Annotation by Michelle Graham. GO Biological Process: lactose catabolic process
SoyBase N/A ISS
GO:0019513 GO-bp
Annotation by Michelle Graham. GO Biological Process: lactose catabolic process, using glucoside 3-dehydrogenase
SoyBase N/A ISS
GO:0019515 GO-bp
Annotation by Michelle Graham. GO Biological Process: lactose catabolic process via UDP-galactose
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0005618 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cell wall
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0004553 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds
SoyBase N/A ISS
GO:0004565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: beta-galactosidase activity
SoyBase N/A ISS
GO:0043169 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cation binding
SoyBase N/A ISS
PTHR23421 Panther
BETA-GALACTOSIDASE RELATED
JGI ISS
PTHR23421:SF33 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01301 PFAM
Glycosyl hydrolases family 35
JGI ISS
UniRef100_I1KUU7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Beta-galactosidase n=1 Tax=Glycine max RepID=I1KUU7_SOYBN
SoyBase E_val: 2.00E-25 ISS
UniRef100_I1KUU7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Beta-galactosidase n=1 Tax=Glycine max RepID=I1KUU7_SOYBN
SoyBase E_val: 2.00E-25 ISS
Expression Patterns of Glyma04g15190
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma04g15190 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma04g15190
Coding sequences of Glyma04g15190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g15190.1 sequence type=CDS gene model=Glyma04g15190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTTGTGTCCTATGACCATAAGCCTATCCTCATCAATGGACAGAGAAGGATAATGTGGCTAGATCTTATTCAAAAGGCAAAGGAAGGAGGTTTGGATGTCATTCAAACTTATGTTTTCTGGAATGAACATGAACCTTCACCTGGCAAAGTTACTCAAGCAGGCCTCTATGTTAACCTCAGAATTGGTCCTTAT
Predicted protein sequences of Glyma04g15190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g15190.1 sequence type=predicted peptide gene model=Glyma04g15190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
FVSYDHKPILINGQRRIMWLDLIQKAKEGGLDVIQTYVFWNEHEPSPGKVTQAGLYVNLRIGPY