Glyma04g15160 - SoyBase

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Report for Sequence Feature Glyma04g15160

Feature Type:	gene_model
Chromosome:	Gm04
Start:	15686529
stop:	15698254
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g15160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G53530	AT	Annotation by Michelle Graham. TAIR10: vacuolar protein sorting 26A \| chr5:21746275-21748156 REVERSE LENGTH=302	SoyBase	E_val: 0	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0007034	GO-bp	Annotation by Michelle Graham. GO Biological Process: vacuolar transport	SoyBase	N/A	ISS
GO:0008333	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosome to lysosome transport	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016197	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosomal transport	SoyBase	N/A	ISS
GO:0042147	GO-bp	Annotation by Michelle Graham. GO Biological Process: retrograde transport, endosome to Golgi	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005771	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: multivesicular body	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0030904	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: retromer complex	SoyBase	N/A	ISS
GO:0043231	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular membrane-bounded organelle	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3063	KOG	Membrane coat complex Retromer, subunit VPS26	JGI		ISS
PTHR12233	Panther	VACUOLAR PROTEIN SORTING 26 RELATED	JGI		ISS
PF03643	PFAM	Vacuolar protein sorting-associated protein 26	JGI		ISS
UniRef100_I1JVX3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVX3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q3HRZ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar protein sorting-associated protein 26-like protein n=1 Tax=Solanum tuberosum RepID=Q3HRZ1_SOLTU	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g15160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g15160 not represented in the dataset	Glyma04g15160 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g15160

Paralog	Evidence	Comments
Glyma06g46990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g15160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g125800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g15160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g15160

Limit To All Plant Sequences

>Glyma04g15160.1   sequence type=CDS   gene model=Glyma04g15160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTACCTTCTTGGAGCTTTCAAGCCTGCATGTAATGTCTTGATCACGTTTAATGATGGGAAGAACCGGAAGCAGGTTCCGTTTAAAAAAGAAAATGGTCAAATGGTCACAGTCCCACTTTTCCAAAGTCAAGAAAACATTGGTGGGAAGATTACAATAGAACCAATGCAAGGGAAGAAGATTGATCACAATGGTGTAAAAGTTGAGCTCCTTGGACAGATAGAGATGTATTTTGACAGAGGAAATTTTTATGACTTTACTTCCCTTGTACGAGAACTAGACGTTCCTGGAGAAATCTATGAGAGGAAAACATATGCATTTGAATTTTCTACTGTTGAAATGCCATATGAGACATATAATGGGGTGAATGTGAGGCTTAGGTATGTATTGAAAGTAACCATTAACCGTGGCTATGCTGGGAGCATAGTAGAATACCAGGATTTTGTGGTTCGAAACTATTCTCCACCTCCACAAATTAACAATAGCATCAAGATGGAAGTTGGAATTGAAGATTGTTTACACATCGAATTTGAATACAACAAAAGCAAGTATCATCTCAAAGATGTCATCATTGGTAAGATATACTTTTTACTTGTCAGAATCAAGATAAAAAACATGGATCTTGAGATTAGGCGTCGGGAATCCACGGGATCAGGGACCAACACCCATGTTGAGACAGAAACGTTGGCTAAATTTGAGTTGATGGATGGTGCTCCTGTTAGAGGTGAATCGATTCCAATCAGACTGTTCCTCGGTCCTTATGAGCTGACCCCAACACATCGTAACATTAATAACAAATTTAGTGTGAAGTACTTTTTAAATCTTGTGTTGGTTGATGAAGAGGACAGACGATATTTCAAGCAGCAGGAAATCACAATGTATAGGCTGCAAGAAGAAACTTCATGA

Predicted protein sequences of Glyma04g15160

Limit To All Plant Sequences

>Glyma04g15160.1   sequence type=predicted peptide   gene model=Glyma04g15160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNYLLGAFKPACNVLITFNDGKNRKQVPFKKENGQMVTVPLFQSQENIGGKITIEPMQGKKIDHNGVKVELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYAFEFSTVEMPYETYNGVNVRLRYVLKVTINRGYAGSIVEYQDFVVRNYSPPPQINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGTNTHVETETLAKFELMDGAPVRGESIPIRLFLGPYELTPTHRNINNKFSVKYFLNLVLVDEEDRRYFKQQEITMYRLQEETS*

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