Glyma04g15130 - SoyBase

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Report for Sequence Feature Glyma04g15130

Feature Type:	gene_model
Chromosome:	Gm04
Start:	15582433
stop:	15594758
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g15130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54360	AT	Annotation by Michelle Graham. TAIR10: zinc ion binding \| chr3:20128570-20131581 REVERSE LENGTH=405	SoyBase	E_val: 3.00E-176	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR14140	Panther	NUCLEAR PROTEIN 95	JGI		ISS
PTHR14140:SF13	Panther		JGI		ISS
UniRef100_B9SHW0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SHW0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JVX1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVX1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g15130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g15130

Paralog	Evidence	Comments
Glyma06g47010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g15130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g125600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g15130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g15130

Limit To All Plant Sequences

>Glyma04g15130.3   sequence type=transcript   gene model=Glyma04g15130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATGCACAATAAATGAGGGACTATAAACTCAAATATAAACGATAAGTTCGTCTAACTGTACCATCATCATCCACATTTTTTTTCTCTCACACACTCAACCAAAGACGAAGGAAGAAGAAGAATTACAAAGTACCACCAAACAGGCTGCGACGACGTCGTTCTTTGCAACTTCCAGTTACTTCTCTATATCTCTTTTCGCTCGATCCTGTTCTTGTTCTTGATGAATATGACACCAGTTTGCCCCTTTGTCAAAGCTGCTCGCCCCGATGATAACAATGCCTCTAAGAAATCTGGCGAAAACTCTATGAAACATCAGGCTGAGTCTGAGAGTAAGGTGAAGAAAGAGGTTAATGACTCAGCTAGTACCTCACCAAAGTGCCCTTTTGGATATGATTCACAGTCGTTTAAGATTGGTCCTCTTAGCTGTACGGTGTGCCAAGCACTTTTATTTGACACCAGCAAATGTGTACCTTGTTCTCATGTTTTCTGCAAAGCATGCATATCGCGCTTTAAGGACTGCCCGTTATGTGGGGCTGATATTGTGAAGATCGAGCCTGATGCTAATCTTCAAGGTGTAGTTGATCGCTTTATTGAAGGTCATGCTAGGATCAAAAGGTCTGTTAGTGCAGACAAAGGAGAAGAAGCAGCAGAGAGTAAACAGGTCATATATGAGGATGTGTCTTTGGAAAGAGGTTCTTTCTTGGTGCAACAGGCTATGAGGGCATTCCGTGCTCAGAATTTAGAAAGTGCCAAATCAAGACTCAACTTCTGTGCAGAAGACATTCGTGATCAGTTAGAAAAAGTTGGTAACACTTCAGAGTTATGTTCACAGCTAGGAGCAGTCTTGGGTATGCTTGGTGACTGCTGCCGAGCAATGGGTGATGCGAGTTCTGCAGTTGCATATTTTGAAGAAAGTGTTCAATTTCTGTCGAAGTTGCCAAAAGATGATTTGGAGATTACCCATACACTTTCTGTTTCTCTTAACAAAATTGGAGATCTTAAATATTACGATGGAGACCTTCAAGCTGCAAGATCTTACTATTTTAAATCTTTGAATGTTCGACGTGATGCTGTCAAGCACAATTCAAACGTTCCATCCCAGGTTTTAGATGTTGCTGTCTCTCTTGCGAAAGTTGCGGATGTGGACAGAAATCTAGGGGATGAAAAGTTAGCTACAGATGGATTTCAAGAAGCCATAGATTTACTGGAATCACTCACGTTGAAATCTGAAGCTAGTGGGCTCGAGCAGCGGCGGCAATCCGTCATAGATTTCCTTAGAAGCCAACTTCCAGATAAACAAGAACAAGCTGAGGCAACAGTCTGAGATAGGTGGTCCACATGAAGAAAGGAAACACAAATTCAGATGCAATAAAAAATGTTACGGTATGCCACGAGACGAGCTTGTAAATTAAGGTCGGCTTAACAAAGGCACTACTAATGGAGGAAGAGGAGATTTCAGAGTAATGAATATTTCAGGCATTTCTGGCACTGCAGTACCTTCCTAAGCCTAAGATTCTACAGGGAATCCTTTTTGTATTTTCTTGTGCACCACTCTTGTATTTATTTTTTTTTGTTTCCACCTCTTTAGTTGCTTATCTTCTTGGTGCATACTAGCAATTGCGCTCCTTGCGTCATTGTAACTAAATATACTCTTCTCTAATAAACTAGAAACGAAGTAACAGGTACTATAGGTTGTGTAGTTTGCGTCACAACTTGATGGATACATTCTATACCGTGAAAAGTGAAATTTATAGATATATTTCTTTAATATTCCAATTACACTTT

Coding sequences of Glyma04g15130

Limit To All Plant Sequences

>Glyma04g15130.2   sequence type=CDS   gene model=Glyma04g15130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATGACACCAGTTTGCCCCTTTGTCAAAGCTGCTCGCCCCGATGATAACAATGCCTCTAAGAAATCTGGCGAAAACTCTATGAAACATCAGGCTGAGTCTGAGAGTAAGGTGAAGAAAGAGGTTAATGACTCAGCTAGTACCTCACCAAAGTGCCCTTTTGGATATGATTCACAGTCGTTTAAGATTGGTCCTCTTAGCTGTACGGTGTGCCAAGCACTTTTATTTGACACCAGCAAATGTGTACCTTGTTCTCATGTTTTCTGCAAAGCATGCATATCGCGCTTTAAGGACTGCCCGTTATGTGGGGCTGATATTGTGAAGATCGAGCCTGATGCTAATCTTCAAGGTGTAGTTGATCGCTTTATTGAAGGTCATGCTAGGATCAAAAGGTCTGTTAGTGCAGACAAAGGAGAAGAAGCAGCAGAGAGTAAACAGGTCATATATGAGGATGTGTCTTTGGAAAGAGGTTCTTTCTTGGTGCAACAGGCTATGAGGGCATTCCGTGCTCAGAATTTAGAAAGTGCCAAATCAAGACTCAACTTCTGTGCAGAAGACATTCGTGATCAGTTAGAAAAAGTTGGTAACACTTCAGAGTTATGTTCACAGCTAGGAGCAGTCTTGGGTATGCTTGGTGACTGCTGCCGAGCAATGGGTGATGCGAGTTCTGCAGTTGCATATTTTGAAGAAAGTGTTCAATTTCTGTCGAAGTTGCCAAAAGATGATTTGGAGATTACCCATACACTTTCTGTTTCTCTTAACAAAATTGGAGATCTTAAATATTACGATGGAGACCTTCAAGCTGCAAGATCTTACTATTTTAAATCTTTGAATGTTCGACGTGATGCTGTCAAGCACAATTCAAACGTTCCATCCCAGGTTTTAGATGTTGCTGTCTCTCTTGCGAAAGTTGCGGATGTGGACAGAAATCTAGGGGATGAAAAGTTAGCTACAGATGGATTTCAAGAAGCCATAGATTTACTGGAATCACTCACGTTGAAATCTGAAGCTAGTGGGCTCGAGCAGCGGCGGCAATCCGTCATAGATTTCCTTAGAAGCCAACTTCCAGATAAACAAGAACAAGCTGAGGCAACAGTCTGA

>Glyma04g15130.3   sequence type=CDS   gene model=Glyma04g15130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATGACACCAGTTTGCCCCTTTGTCAAAGCTGCTCGCCCCGATGATAACAATGCCTCTAAGAAATCTGGCGAAAACTCTATGAAACATCAGGCTGAGTCTGAGAGTAAGGTGAAGAAAGAGGTTAATGACTCAGCTAGTACCTCACCAAAGTGCCCTTTTGGATATGATTCACAGTCGTTTAAGATTGGTCCTCTTAGCTGTACGGTGTGCCAAGCACTTTTATTTGACACCAGCAAATGTGTACCTTGTTCTCATGTTTTCTGCAAAGCATGCATATCGCGCTTTAAGGACTGCCCGTTATGTGGGGCTGATATTGTGAAGATCGAGCCTGATGCTAATCTTCAAGGTGTAGTTGATCGCTTTATTGAAGGTCATGCTAGGATCAAAAGGTCTGTTAGTGCAGACAAAGGAGAAGAAGCAGCAGAGAGTAAACAGGTCATATATGAGGATGTGTCTTTGGAAAGAGGTTCTTTCTTGGTGCAACAGGCTATGAGGGCATTCCGTGCTCAGAATTTAGAAAGTGCCAAATCAAGACTCAACTTCTGTGCAGAAGACATTCGTGATCAGTTAGAAAAAGTTGGTAACACTTCAGAGTTATGTTCACAGCTAGGAGCAGTCTTGGGTATGCTTGGTGACTGCTGCCGAGCAATGGGTGATGCGAGTTCTGCAGTTGCATATTTTGAAGAAAGTGTTCAATTTCTGTCGAAGTTGCCAAAAGATGATTTGGAGATTACCCATACACTTTCTGTTTCTCTTAACAAAATTGGAGATCTTAAATATTACGATGGAGACCTTCAAGCTGCAAGATCTTACTATTTTAAATCTTTGAATGTTCGACGTGATGCTGTCAAGCACAATTCAAACGTTCCATCCCAGGTTTTAGATGTTGCTGTCTCTCTTGCGAAAGTTGCGGATGTGGACAGAAATCTAGGGGATGAAAAGTTAGCTACAGATGGATTTCAAGAAGCCATAGATTTACTGGAATCACTCACGTTGAAATCTGAAGCTAGTGGGCTCGAGCAGCGGCGGCAATCCGTCATAGATTTCCTTAGAAGCCAACTTCCAGATAAACAAGAACAAGCTGAGGCAACAGTCTGA

Predicted protein sequences of Glyma04g15130

Limit To All Plant Sequences

>Glyma04g15130.2   sequence type=predicted peptide   gene model=Glyma04g15130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMTPVCPFVKAARPDDNNASKKSGENSMKHQAESESKVKKEVNDSASTSPKCPFGYDSQSFKIGPLSCTVCQALLFDTSKCVPCSHVFCKACISRFKDCPLCGADIVKIEPDANLQGVVDRFIEGHARIKRSVSADKGEEAAESKQVIYEDVSLERGSFLVQQAMRAFRAQNLESAKSRLNFCAEDIRDQLEKVGNTSELCSQLGAVLGMLGDCCRAMGDASSAVAYFEESVQFLSKLPKDDLEITHTLSVSLNKIGDLKYYDGDLQAARSYYFKSLNVRRDAVKHNSNVPSQVLDVAVSLAKVADVDRNLGDEKLATDGFQEAIDLLESLTLKSEASGLEQRRQSVIDFLRSQLPDKQEQAEATV*

>Glyma04g15130.3   sequence type=predicted peptide   gene model=Glyma04g15130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMTPVCPFVKAARPDDNNASKKSGENSMKHQAESESKVKKEVNDSASTSPKCPFGYDSQSFKIGPLSCTVCQALLFDTSKCVPCSHVFCKACISRFKDCPLCGADIVKIEPDANLQGVVDRFIEGHARIKRSVSADKGEEAAESKQVIYEDVSLERGSFLVQQAMRAFRAQNLESAKSRLNFCAEDIRDQLEKVGNTSELCSQLGAVLGMLGDCCRAMGDASSAVAYFEESVQFLSKLPKDDLEITHTLSVSLNKIGDLKYYDGDLQAARSYYFKSLNVRRDAVKHNSNVPSQVLDVAVSLAKVADVDRNLGDEKLATDGFQEAIDLLESLTLKSEASGLEQRRQSVIDFLRSQLPDKQEQAEATV*

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