SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G22370 | AT | Annotation by Michelle Graham. TAIR10: alternative oxidase 1A | chr3:7906890-7908416 FORWARD LENGTH=354 | SoyBase | E_val: 0 | ISS |
| GO:0007585 | GO-bp | Annotation by Michelle Graham. GO Biological Process: respiratory gaseous exchange | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0031930 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitochondria-nucleus signaling pathway | SoyBase | N/A | ISS |
| GO:0045333 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular respiration | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005740 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial envelope | SoyBase | N/A | ISS |
| GO:0009916 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alternative oxidase activity | SoyBase | N/A | ISS |
| PF01786 | PFAM | Alternative oxidase | JGI | ISS | |
| UniRef100_I1JVV5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alternative oxidase n=3 Tax=Glycine max RepID=I1JVV5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JVV5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Alternative oxidase n=3 Tax=Glycine max RepID=I1JVV5_SOYBN | SoyBase | E_val: 0 | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| AOX1A | alternative oxidase 1A |
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Glyma04g14800 not represented in the dataset |
Glyma04g14800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g123800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g14800.1 sequence type=CDS gene model=Glyma04g14800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGATGATGATGAGCCGCAGCGGCGCCAACCGGGTAGCGAACACCGCAATGTTTGTGGCGAAGGGTTTAAGCGGCGAAGTTGGTGGTTTAAGAGCATTATATGGCGGTGGTGTGAGGAGTGAGAGCACTTTGGCTTTGTCAGAGAAGGAAAAGATTGAGAAGAAGGTTGGTTTGTCTTCTGCTGGTGGGAACAAAGAAGAAAAAGTGATCGTGAGTTATTGGGGCATTCAACCCTCCAAGATCACAAAAAAAGATGGCACAGAATGGAAGTGGAATTGCTTTAGGCCATGGGAGACATACAAAGCAGATCTTTCCATTGATCTGGAGAAGCACCATGCTCCAACCACGTTTCTGGACAAAATGGCTTTTTGGACTGTCAAGGTTCTCAGATACCCCACCGATGTGTTTTTCCAGAGGCGATATGGATGCCGAGCAATGATGCTAGAAACAGTGGCTGCAGTCCCTGGGATGGTAGCAGGCATGCTACTTCACTGCAAATCCCTAAGAAGATTTGAGCACAGTGGTGGTTGGATCAAAGCACTGCTGGAAGAAGCAGAGAACGAGCGTATGCACCTAATGACCTTCATGGAAGTGGCAAAGCCAAAGTGGTATGAGCGTGCACTAGTGATAACTGTGCAAGGTGTTTTCTTCAATGCATACTTCTTGGGGTATTTGTTGTCACCTAAATTCGCACACCGCATGGTTGGTTACCTGGAGGAGGAAGCAATTCACTCCTACACAGAGTTCCTTAAGGAGCTGGACAAGGGCAATATCGAAAATGTGCCGGCTCCAGCCATTGCCATTGACTACTGGCAGCTCCCACCAGGCTCCACTTTAAGGGATGTTGTCATGGTTGTAAGAGCTGATGAGGCACACCATCGTGATGTCAACCACTTTGCATCGGACATTCACTATCAAGGGCGAGAGTTACGAGAGGCTGCTGCTCCAATTGGTTATCACTAA
>Glyma04g14800.1 sequence type=predicted peptide gene model=Glyma04g14800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMMMMSRSGANRVANTAMFVAKGLSGEVGGLRALYGGGVRSESTLALSEKEKIEKKVGLSSAGGNKEEKVIVSYWGIQPSKITKKDGTEWKWNCFRPWETYKADLSIDLEKHHAPTTFLDKMAFWTVKVLRYPTDVFFQRRYGCRAMMLETVAAVPGMVAGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWQLPPGSTLRDVVMVVRADEAHHRDVNHFASDIHYQGRELREAAAPIGYH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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