Glyma04g14790 - SoyBase

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Report for Sequence Feature Glyma04g14790

Feature Type:	gene_model
Chromosome:	Gm04
Start:	14974937
stop:	14979059
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g14790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45380	AT	Annotation by Michelle Graham. TAIR10: solute:sodium symporters;urea transmembrane transporters \| chr5:18391337-18395696 FORWARD LENGTH=704	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006995	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation	SoyBase	N/A	ISS
GO:0035725	GO-bp	Annotation by Michelle Graham. GO Biological Process: sodium ion transmembrane transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015204	GO-mf	Annotation by Michelle Graham. GO Molecular Function: urea transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015370	GO-mf	Annotation by Michelle Graham. GO Molecular Function: solute:sodium symporter activity	SoyBase	N/A	ISS
KOG2348	KOG	Urea transporter	JGI		ISS
PTHR11819	Panther	SODIUM/SOLUTE SYMPORTER	JGI		ISS
PTHR11819:SF15	Panther	gb def: proline permease (putp-2) [archaeoglobus fulgidus]	JGI		ISS
PF00474	PFAM	Sodium:solute symporter family	JGI		ISS
UniRef100_G7K6S1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Urea active transporter-like protein n=1 Tax=Medicago truncatula RepID=G7K6S1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A6A8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A6A8 related cluster n=1 Tax=unknown RepID=UPI000233A6A8	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g14790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g14790 not represented in the dataset	Glyma04g14790 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g14790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g123700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g14790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g14790

Limit To All Plant Sequences

>Glyma04g14790.1   sequence type=CDS   gene model=Glyma04g14790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGCATTAGTAGAGTGTCCACCATTTGAATTTTCTAGCAAGTACTATCATGTGTCTGAAAATGGAGGTGTGTGTGTGAGGCAGACCAGTTTCTTTGAAGGCAAACCAGTGCTTAATCAGGGTGTTGGTTACTCTGTCATTCTTGGTTTTGGTGCTTTCTTTGCCGTCTTCACCTCTTTCTTGGTGTGGCTGGAGAAGCGTTATGTTGGGTCACGTCACACATCTGAATGGTTCAATACAGCAGGAAGAAATGTTAAGACGGGGCTTATTGCAAGTGTCATTGTGTCTCAGTGGACATGGGCTGCTACAATCCTGCAAAGCTCTAATGTTGCATGGGAGTATGGAGTTAGTGGACCTTTCTGGTATGCTAGTGGGGCCACCATCCAGGTATTGTTGTTTGGAATCATGGCTATAGAGATTAAAAGAAAGGCTCCTCATGCTCATACTGTGTGTGAAATTGTCAAGGCCCGTTGGGGGACTTCTGCGCACATTGTTTTCCTCATTTTCTGCTTCTTGACGAATATAATTGTGACGGCTATGTTGCTCCTCGGTGGTTCTGCGGTTGTAAATGCATTAACTGGAGTGAACCTTTATGCTGCTAGCTTTCTAATACCACTTGGAGTAATTGTCTATACACTAGCGGGTGGACTGAAGGCCACATTCTTAGCAAGCTATATCCATTCTGTCATAGTGCACATTGTTTTGGTGATTTTTGTCTACCTTGTCTACACGGCTAGCAGCGAGCTTGGTAGCCCTTCTGTTGTTTACAATCGCCTGCTAGAGGTTGCAAGCAAATCAAGAACATGTCAGGATCCTATATCACACCAAGGACAATCTTGTGGTCCAGTTAGTGGTAATCACAAAGGTTCTTACCTAACAATGCTAAGTTCCGGTGGCTTAGTTTTTGGGATTATAAACATTGTTGGAAATTTTGGCACTGTGTTTGTTGACAATGGATATTGGGTGAGTGCCATTGCTGCAAGACCTTCATCTACTCATAAGGGGTACTTGTTGGGAGGCTTGGTCTGGTTTGCTGTGCCATTTTCTTTGGCTACATCATTAGGTCTAGGAGCCCTGGCCCTTGATTTACCAATAAATGAAAATGAAGCAGGCCGTGGACTTGTTCCCCCTGCTACGGCTGTAGCTTTGATGGGGAAAGGAGGATCTATTCTTCTTCTTACCATGCTTTTTATGGCAGTAACTTCTGCTGGTTCATCAGAACTCATTGCGGTGTCCTCATTATGCACATATGATATCTACCGAACTTACATAAATCCTAATGCAAGTGGAAAGCAAATCCTCAAAGTGTCAAGGGGTGTCGTCCTAGGATTCGGGTGTTTCATGGGGTTGTTAGCAGTTATACTGAACAAGGCTGAAGTTTCTTTAGGATGGATGTACCTTGCAATGGGAGTTCTGATTGGCTCAGCAGTTCTTCCCATTGCTTTTATGCTTCTATGGAGAAAAGCAAATGCAATTGGAGCCATTCTTGGAACAGTGTTAGGTTGTGTTTTAGGAATTATCACTTGGCTGTCTGTTACAAAAATACAATATGGCCGGGTAAACCTCAATACAACTGGCAGAAATGCACCAATGCTTGCTGGAAACCTTGTCTCTATACTAACTGGAGGAGTTGCTCATGCTGTCTGCAGCATGTTGAGACCTCAGAACTATGACTGGAGTACCACCAAGCAAATCACAGTGGTTGAAAAGGAAAAATCTAATCTTCCAGCAGAAGAGTTTAAAGAAGAAAAACTAATCAGAGCTAAATCATGGGTGGTGAAGTGGGGTGTTGGTTTCACTCTTTTGATTGTCATTCTATGGCCTATTCTCTCCCTCCCAGCAGGGGAGTTTAGTAAGGGCTACTTCTATTTCTGGGCAGTGATTGCTATAGGATGGGGTACTGTTGGTTCTGCTGTGATAATTGTTTTACCACTAATAGAGAGCTGGGAAACCATTCAGACAGTTATTATGGGCATGTTTACAAATGACAGGCTCATGGAAAAGGTAGAGGAGTTAAATTTCAAGTTGCAGACCATCATGCAGGCAATGCCAGAAGCTGAGAGACTTTACTTGCTTGAGAAGGGGAAGGCCAAAAAGTTAGACTCCTCGGAACAGCAGGCTAGTTCTCTTCCTGCATAA

Predicted protein sequences of Glyma04g14790

Limit To All Plant Sequences

>Glyma04g14790.1   sequence type=predicted peptide   gene model=Glyma04g14790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASALVECPPFEFSSKYYHVSENGGVCVRQTSFFEGKPVLNQGVGYSVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGIMAIEIKRKAPHAHTVCEIVKARWGTSAHIVFLIFCFLTNIIVTAMLLLGGSAVVNALTGVNLYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHIVLVIFVYLVYTASSELGSPSVVYNRLLEVASKSRTCQDPISHQGQSCGPVSGNHKGSYLTMLSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPINENEAGRGLVPPATAVALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPNASGKQILKVSRGVVLGFGCFMGLLAVILNKAEVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAILGTVLGCVLGIITWLSVTKIQYGRVNLNTTGRNAPMLAGNLVSILTGGVAHAVCSMLRPQNYDWSTTKQITVVEKEKSNLPAEEFKEEKLIRAKSWVVKWGVGFTLLIVILWPILSLPAGEFSKGYFYFWAVIAIGWGTVGSAVIIVLPLIESWETIQTVIMGMFTNDRLMEKVEELNFKLQTIMQAMPEAERLYLLEKGKAKKLDSSEQQASSLPA*

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