Glyma04g14640 - SoyBase

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Report for Sequence Feature Glyma04g14640

Feature Type:	gene_model
Chromosome:	Gm04
Start:	14769509
stop:	14772055
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g14640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49010	AT	Annotation by Michelle Graham. TAIR10: breast basic conserved 1 \| chr3:18166971-18168047 REVERSE LENGTH=206	SoyBase	E_val: 8.00E-125	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG3295	KOG	60S Ribosomal protein L13	JGI		ISS
PTHR11722	Panther	60S RIBOSOMAL PROTEIN L13	JGI		ISS
PF01294	PFAM	Ribosomal protein L13e	JGI		ISS
UniRef100_I1JVU2	UniRef	Annotation by Michelle Graham. Best UniRef hit: 60S ribosomal protein L13 n=1 Tax=Glycine max RepID=I1JVU2_SOYBN	SoyBase	E_val: 2.00E-148	ISS
UniRef100_I1JVU2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L13 n=1 Tax=Glycine max RepID=I1JVU2_SOYBN	SoyBase	E_val: 2.00E-148	ISS

Expression Patterns of Glyma04g14640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g14640 not represented in the dataset	Glyma04g14640 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g14640

Paralog	Evidence	Comments
Glyma09g34760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g14640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g122700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g14640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g14640

Limit To All Plant Sequences

>Glyma04g14640.4   sequence type=transcript   gene model=Glyma04g14640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTAAACGCAATCCTAACCGTCCAATTTAGGTGTTGTATGAGTCGTAGCCTACTTTAAAATGCAGCACAAACCCTAATTTGTGCCTCCGTCACTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTCTTAGACCCATTGTACATGGTCAAACTTTGAAATACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGATCATCGCCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGAGGCTGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACAGAAGGTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACGCAAGTCCAGGGTTCTTTCTTGCCTATTGTGAGGGAGAAGCCAACTGTTGAACTTGTAAAGGTTACAGATGACATGAAGGCTTTTAAAGCTTATTACAAGCTTCGACTTGAACGCACAAACAAACGCCATTATGGTGCCAGACTGAAGAAGGCTGCCGAAGCTGAGAAGGAAGACAAAAAGTGATGACCTTAGAAGTCTCTCGTTTGTAGTCCATCCATATAATAGTTGTTGCAAGACAATTTTTGCACGAGATTGATTAGCTCTATTCAGAACATGTTCAGTCTAAAACATGGATATTTTCACCCATTTTTATTGTGAACTTTTATTCAAGTTTGTTGGTTTAACTAGCATTTTGTTTTGTCTGGATTAATTTGGCAGTATTGTATTGATTTTGTTCAGAGGCTGTTTTCTAATTGCTGTTGGCATAGTTATTAATTTATTAGTGATTATGGGATAATAGTTAGTCTCTTCTCTAACTCAGCCCCACCATAATGGTGGGAGGTGGATAATT

Coding sequences of Glyma04g14640

Limit To All Plant Sequences

>Glyma04g14640.3   sequence type=CDS   gene model=Glyma04g14640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTCTTAGACCCATTGTACATGGTCAAACTTTGAAATACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGATCATCGCCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGAGGCTGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACAGAAGGTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACGCAAGTCCAGGGTTCTTTCTTGCCTATTGTGAGGGAGAAGCCAACTGTTGAACTTGTAAAGGTTACAGATGACATGAAGGCTTTTAAAGCTTATTACAAGCTTCGACTTGAACGCACAAACAAACGCCATTATGGTGCCAGACTGAAGAAGGCTGCCGAAGCTGAGAAGGAAGACAAAAAGTGA

>Glyma04g14640.4   sequence type=CDS   gene model=Glyma04g14640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTCTTAGACCCATTGTACATGGTCAAACTTTGAAATACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGATCATCGCCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGAGGCTGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACAGAAGGTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACGCAAGTCCAGGGTTCTTTCTTGCCTATTGTGAGGGAGAAGCCAACTGTTGAACTTGTAAAGGTTACAGATGACATGAAGGCTTTTAAAGCTTATTACAAGCTTCGACTTGAACGCACAAACAAACGCCATTATGGTGCCAGACTGAAGAAGGCTGCCGAAGCTGAGAAGGAAGACAAAAAGTGA

Predicted protein sequences of Glyma04g14640

Limit To All Plant Sequences

>Glyma04g14640.3   sequence type=predicted peptide   gene model=Glyma04g14640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKHNNVIPNGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRKNRSLESLQANVQRLKTYKAKLVVFPRRAQKVKAGDSTPEELANATQVQGSFLPIVREKPTVELVKVTDDMKAFKAYYKLRLERTNKRHYGARLKKAAEAEKEDKK*

>Glyma04g14640.4   sequence type=predicted peptide   gene model=Glyma04g14640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKHNNVIPNGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRKNRSLESLQANVQRLKTYKAKLVVFPRRAQKVKAGDSTPEELANATQVQGSFLPIVREKPTVELVKVTDDMKAFKAYYKLRLERTNKRHYGARLKKAAEAEKEDKK*

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