SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G26310 | AT | Annotation by Michelle Graham. TAIR10: elongation factor P (EF-P) family protein | chr4:13314006-13316066 REVERSE LENGTH=258 | SoyBase | E_val: 1.00E-61 | ISS |
| GO:0006414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational elongation | SoyBase | N/A | ISS |
| GO:0043043 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peptide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003746 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity | SoyBase | N/A | ISS |
| PF01132 | PFAM | Elongation factor P (EF-P) OB domain | JGI | ISS | |
| PF08207 | PFAM | Elongation factor P (EF-P) KOW-like domain | JGI | ISS | |
| PF09285 | PFAM | Elongation factor P, C-terminal | JGI | ISS | |
| UniRef100_G7J9M0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Elongation factor P n=1 Tax=Medicago truncatula RepID=G7J9M0_MEDTR | SoyBase | E_val: 3.00E-112 | ISS |
| UniRef100_I1JVU1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVU1_SOYBN | SoyBase | E_val: 1.00E-180 | ISS |
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Glyma04g14630 not represented in the dataset |
Glyma04g14630 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g122600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g14630.2 sequence type=transcript gene model=Glyma04g14630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATAAATCGAAAAAACGCCGTAAGTCCCATCTTTCTCCTTCATCTCGCAGCTCTGTCATTTCCGGTTTCGCACCGTATTCAGGTTCACTTACTAAGGCATATGCTGCAATTGCAACATTGAATCACAGATTTTGGCATCAGTTTTTTCTGGAAAAAGGTATTGTGCCTTCCTTTGCATTCTAACCTGTTCAAGGGTTTGTGATCGACCAAAGTAAAGTGAGACAATGCAAGCTCTGTTGCTGAGGCATAGGCTTTCCAATTCCAACACCAAGTCTCTTTTCAGACTTTCATCCTATTTTCATTCTTCCTCTTGTTCTCCGCGACCATTCATTCCGTCACCACCTTCTGCTTCCTCCATCGCTACCAACTTGTTCACCTCTCCATGGTCTGCCTCTCAATGTCGCGGAATCAAAGTATCTGGTTCTGATATTAAAGTCGGAAATATCATTGGAAAACAAGGGCACTTTTACGAGGTTCTTAAAGTAGATCACTCTCATGAAGGAAGAGGAAAAGCCACAATCAAGGTAGAACTTCGTGACATTGACCAGGGAAACAAGGTAACACAAAGAATGGGTACCGATGAGGATGTTGAAAGGGTCTACGTTCAGGAAAAGACTTTCATGTTTATGTGCATGGATAGTGATGGAACTGTTGTATTGATGGACCCTGACACATTGGATCAAATTGAAGTTTCCAAGGACTTGTTCAACAAGGATTGCTTATATCTACGAGATGAAATGAAAGTTAAGGTACATTTTTATGACGACAAACCTTTATCTGCATCAGTTCCAAAACGCGTAACGTGTATTGTCAAGGAAGCCATTGCAGCCACTTCGAGGAATAAAAAGGTAGTACTGGACAATGGCCTTACAGTTGAAGTACCATCTCACATTGTAGCTGGTGATGCCATAGTTGTTAGTACAGAGCATGACTCCTATATAGAAAGGGCCAAAGCATAGTGTGACTTGAGCCAGGATTTGAGCAGAGACAACCAATATCTAATTGTCACGAGTTTTGAAGCAGAATTGACCTATTTATTCTGCCTCCTAGCCCTCCTCATTCTTTCACTTGATAATAAGTGAGTTTTGATTTTTTAATTGATGGCTTTTTCTGTATCTGCTAGCAATGAGTTTGGACGTTCTAACTTCTAAGGGTATCTTTGTCTTTGTCTTTGTGCACACATGAGTCATGACTACTTGTTTAGTTTATGCACAACGAAAGAAGCAAAGACAAAAATCTTGATTGTTGAAATTTTAGATGATAAAAAATCACTTGGACAGTTATGAATAACATTCAATTCATCTATTGGTGGGACATATGTGGAGTAAAGTAATGGATTGAAAATAAATGTTCGTAGTTGTGGATAATTAAATAAAATGAATTTTCGTTGACAGATAATTAATATTCTGATATGTTTCTGTGTTAAGGAGAAACTATTTTGTCATAGCCTGCGACTCCTAAGGTTATCTTTCTTTCTTTGGCACAGTGTAGG >Glyma04g14630.3 sequence type=transcript gene model=Glyma04g14630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATAAATCGAAAAAACGCCGTAAGTCCCATCTTTCTCCTTCATCTCGCAGCTCTGTCATTTCCGGTTTCGCACCGTATTCAGGTTCACTTACTAAGGCATATGCTGCAATTGCAACATTGAAGTAATCTGAATTCCGTCTTAAGCTATTCACAGATTTTGGCATCAGTTTTTTCTGGAAAAAGGTATTGTGCCTTCCTTTGCATTCTAACCTGTTCAAGGGTTTGTGATCGACCAAAGTAAAGTGAGACAATGCAAGCTCTGTTGCTGAGGCATAGGCTTTCCAATTCCAACACCAAGTCTCTTTTCAGACTTTCATCCTATTTTCATTCTTCCTCTTGTTCTCCGCGACCATTCATTCCGTCACCACCTTCTGCTTCCTCCATCGCTACCAACTTGTTCACCTCTCCATGGTCTGCCTCTCAATGTCGCGGAATCAAAGTATCTGGTTCTGATATTAAAGTCGGAAATATCATTGGAAAACAAGGGCACTTTTACGAGGTTCTTAAAGTAGATCACTCTCATGAAGGAAGAGGAAAAGCCACAATCAAGGTAGAACTTCGTGACATTGACCAGGGAAACAAGGTAACACAAAGAATGGGTACCGATGAGGATGTTGAAAGGGTCTACGTTCAGGAAAAGACTTTCATGTTTATGTGCATGGATAGTGATGGAACTGTTGTATTGATGGACCCTGACACATTGGATCAAATTGAAGTTTCCAAGGACTTGTTCAACAAGGATTGCTTATATCTACGAGATGAAATGAAAGTTAAGGTACATTTTTATGACGACAAACCTTTATCTGCATCAGTTCCAAAACGCGTAACGTGTATTGTCAAGGAAGCCATTGCAGCCACTTCGAGGAATAAAAAGGTAGTACTGGACAATGGCCTTACAGTTGAAGTACCATCTCACATTGTAGCTGGTGATGCCATAGTTGTTAGTACAGAGCATGACTCCTATATAGAAAGGGCCAAAGCATAGTGTGACTTGAGCCAGGATTTGAGCAGAGACAACCAATATCTAATTGTCACGAGTTTTGAAGCAGAATTGACCTATTTATTCTGCCTCCTAGCCCTCCTCATTCTTTCACTTGATAATAAGTGAGTTTTGATTTTTTAATTGATGGCTTTTTCTGTATCTGCTAGCAATGAGTTTGGACGTTCTAACTTCTAAGGGTATCTTTGTCTTTGTCTTTGTGCACACATGAGTCATGACTACTTGTTTAGTTTATGCACAACGAAAGAAGCAAAGACAAAAATCTTGATTGTTGAAATTTTAGATGATAAAAAATCACTTGGACAGTTATGAATAACATTCAATTCATCTATTGGTGGGACATATGTGGAGTAAAGTAATGGATTGAAAATAAATGTTCGTAGTTGTGGATAATTAAATAAAATGAATTTTCGTTGACAGATAATTAATATTCTGATATGTTTCTGTGTTAAGGAGAAACTATTTTGTCATAGCCTGCGACTCCTAAGGTTATCTTTCTTTCTTTGGCACAGTGTAGG
>Glyma04g14630.1 sequence type=CDS gene model=Glyma04g14630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAGCTCTGTTGCTGAGGCATAGGCTTTCCAATTCCAACACCAAGTCTCTTTTCAGACTTTCATCCTATTTTCATTCTTCCTCTTGTTCTCCGCGACCATTCATTCCGTCACCACCTTCTGCTTCCTCCATCGCTACCAACTTGTTCACCTCTCCATGGTCTGCCTCTCAATGTCGCGGAATCAAAGTATCTGGTTCTGATATTAAAGTCGGAAATATCATTGGAAAACAAGGGCACTTTTACGAGGTTCTTAAAGTAGATCACTCTCATGAAGGAAGAGGAAAAGCCACAATCAAGGTAGAACTTCGTGACATTGACCAGGGAAACAAGGTAACACAAAGAATGGGTACCGATGAGGATGTTGAAAGGGTCTACGTTCAGGAAAAGACTTTCATGTTTATGTGCATGGATAGTGATGGAACTGTTGTATTGATGGACCCTGACACATTGGATCAAATTGAAGTTTCCAAGGACTTGTTCAACAAGGATTGCTTATATCTACGAGATGAAATGAAAGTTAAGGTACATTTTTATGACGACAAACCTTTATCTGCATCAGTTCCAAAACGCGTAACGTGTATTGTCAAGGAAGCCATTGCAGCCACTTCGAGGAATAAAAAGGTAGTACTGGACAATGGCCTTACAGTTGAAGTACCATCTCACATTGTAGCTGGTGATGCCATAGTTGTTAGTACAGAGCATGACTCCTATATAGAAAGGGCCAAAGCATAG >Glyma04g14630.2 sequence type=CDS gene model=Glyma04g14630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAGCTCTGTTGCTGAGGCATAGGCTTTCCAATTCCAACACCAAGTCTCTTTTCAGACTTTCATCCTATTTTCATTCTTCCTCTTGTTCTCCGCGACCATTCATTCCGTCACCACCTTCTGCTTCCTCCATCGCTACCAACTTGTTCACCTCTCCATGGTCTGCCTCTCAATGTCGCGGAATCAAAGTATCTGGTTCTGATATTAAAGTCGGAAATATCATTGGAAAACAAGGGCACTTTTACGAGGTTCTTAAAGTAGATCACTCTCATGAAGGAAGAGGAAAAGCCACAATCAAGGTAGAACTTCGTGACATTGACCAGGGAAACAAGGTAACACAAAGAATGGGTACCGATGAGGATGTTGAAAGGGTCTACGTTCAGGAAAAGACTTTCATGTTTATGTGCATGGATAGTGATGGAACTGTTGTATTGATGGACCCTGACACATTGGATCAAATTGAAGTTTCCAAGGACTTGTTCAACAAGGATTGCTTATATCTACGAGATGAAATGAAAGTTAAGGTACATTTTTATGACGACAAACCTTTATCTGCATCAGTTCCAAAACGCGTAACGTGTATTGTCAAGGAAGCCATTGCAGCCACTTCGAGGAATAAAAAGGTAGTACTGGACAATGGCCTTACAGTTGAAGTACCATCTCACATTGTAGCTGGTGATGCCATAGTTGTTAGTACAGAGCATGACTCCTATATAGAAAGGGCCAAAGCATAG >Glyma04g14630.3 sequence type=CDS gene model=Glyma04g14630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAGCTCTGTTGCTGAGGCATAGGCTTTCCAATTCCAACACCAAGTCTCTTTTCAGACTTTCATCCTATTTTCATTCTTCCTCTTGTTCTCCGCGACCATTCATTCCGTCACCACCTTCTGCTTCCTCCATCGCTACCAACTTGTTCACCTCTCCATGGTCTGCCTCTCAATGTCGCGGAATCAAAGTATCTGGTTCTGATATTAAAGTCGGAAATATCATTGGAAAACAAGGGCACTTTTACGAGGTTCTTAAAGTAGATCACTCTCATGAAGGAAGAGGAAAAGCCACAATCAAGGTAGAACTTCGTGACATTGACCAGGGAAACAAGGTAACACAAAGAATGGGTACCGATGAGGATGTTGAAAGGGTCTACGTTCAGGAAAAGACTTTCATGTTTATGTGCATGGATAGTGATGGAACTGTTGTATTGATGGACCCTGACACATTGGATCAAATTGAAGTTTCCAAGGACTTGTTCAACAAGGATTGCTTATATCTACGAGATGAAATGAAAGTTAAGGTACATTTTTATGACGACAAACCTTTATCTGCATCAGTTCCAAAACGCGTAACGTGTATTGTCAAGGAAGCCATTGCAGCCACTTCGAGGAATAAAAAGGTAGTACTGGACAATGGCCTTACAGTTGAAGTACCATCTCACATTGTAGCTGGTGATGCCATAGTTGTTAGTACAGAGCATGACTCCTATATAGAAAGGGCCAAAGCATAG
>Glyma04g14630.1 sequence type=predicted peptide gene model=Glyma04g14630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQALLLRHRLSNSNTKSLFRLSSYFHSSSCSPRPFIPSPPSASSIATNLFTSPWSASQCRGIKVSGSDIKVGNIIGKQGHFYEVLKVDHSHEGRGKATIKVELRDIDQGNKVTQRMGTDEDVERVYVQEKTFMFMCMDSDGTVVLMDPDTLDQIEVSKDLFNKDCLYLRDEMKVKVHFYDDKPLSASVPKRVTCIVKEAIAATSRNKKVVLDNGLTVEVPSHIVAGDAIVVSTEHDSYIERAKA* >Glyma04g14630.2 sequence type=predicted peptide gene model=Glyma04g14630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQALLLRHRLSNSNTKSLFRLSSYFHSSSCSPRPFIPSPPSASSIATNLFTSPWSASQCRGIKVSGSDIKVGNIIGKQGHFYEVLKVDHSHEGRGKATIKVELRDIDQGNKVTQRMGTDEDVERVYVQEKTFMFMCMDSDGTVVLMDPDTLDQIEVSKDLFNKDCLYLRDEMKVKVHFYDDKPLSASVPKRVTCIVKEAIAATSRNKKVVLDNGLTVEVPSHIVAGDAIVVSTEHDSYIERAKA* >Glyma04g14630.3 sequence type=predicted peptide gene model=Glyma04g14630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQALLLRHRLSNSNTKSLFRLSSYFHSSSCSPRPFIPSPPSASSIATNLFTSPWSASQCRGIKVSGSDIKVGNIIGKQGHFYEVLKVDHSHEGRGKATIKVELRDIDQGNKVTQRMGTDEDVERVYVQEKTFMFMCMDSDGTVVLMDPDTLDQIEVSKDLFNKDCLYLRDEMKVKVHFYDDKPLSASVPKRVTCIVKEAIAATSRNKKVVLDNGLTVEVPSHIVAGDAIVVSTEHDSYIERAKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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