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Report for Sequence Feature Glyma04g14430

Feature Type:gene_model
Chromosome:Gm04
Start:14527113
stop:14527597
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g14430
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G04770AT Annotation by Michelle Graham. TAIR10: 40s ribosomal protein SA B | chr3:1309465-1310846 REVERSE LENGTH=332 SoyBaseE_val: 4.00E-20ISS
GO:0000028GO-bp Annotation by Michelle Graham. GO Biological Process: ribosomal small subunit assembly SoyBaseN/AISS
GO:0000447GO-bp Annotation by Michelle Graham. GO Biological Process: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) SoyBaseN/AISS
GO:0000461GO-bp Annotation by Michelle Graham. GO Biological Process: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) SoyBaseN/AISS
GO:0006407GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA export from nucleus SoyBaseN/AISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0022627GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit SoyBaseN/AISS
GO:0030686GO-cc Annotation by Michelle Graham. GO Cellular Compartment: 90S preribosome SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
PTHR11489Panther RIBOSOMAL PROTEIN S2, EUKARYOTIC AND ARCHAEAL FORM JGI ISS
PTHR11489:SF7Panther 40S RIBOSOMAL PROTEIN SA JGI ISS
UniRef100_O65751UniRef Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein SA n=1 Tax=Cicer arietinum RepID=RSSA_CICAR SoyBaseE_val: 4.00E-22ISS
UniRef100_UPI000189D1B4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000189D1B4 related cluster n=1 Tax=unknown RepID=UPI000189D1B4 SoyBaseE_val: 3.00E-22ISS

Expression Patterns of Glyma04g14430
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g14430 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma04g14430
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g14430
>Glyma04g14430.1   sequence type=CDS   gene model=Glyma04g14430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTACGAATGCCACTGTCGCCCCACCACGCCAGCTCTCCCAGAAGGAAGTCGACATCCAGATGATGTTGGCCGTCGATGTCCACCTCGACACCAAGAACTGCAACTTCCAAATGGAACATTACATCTTCAAGCGCCACAACGACGTTGATATCATTGTGCAATCTTACACTGGTGCTCATGCTATTGTTGGAAGGCACACTCCC
Predicted protein sequences of Glyma04g14430
>Glyma04g14430.1   sequence type=predicted peptide   gene model=Glyma04g14430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATNATVAPPRQLSQKEVDIQMMLAVDVHLDTKNCNFQMEHYIFKRHNDVDIIVQSYTGAHAIVGRHTP






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