Glyma04g14320 - SoyBase

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Report for Sequence Feature Glyma04g14320

Feature Type:	gene_model
Chromosome:	Gm04
Start:	14233275
stop:	14240822
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g14320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G66020	AT	Annotation by Michelle Graham. TAIR10: Phosphoinositide phosphatase family protein \| chr5:26401193-26404691 REVERSE LENGTH=593	SoyBase	E_val: 0	ISS
GO:0032957	GO-bp	Annotation by Michelle Graham. GO Biological Process: inositol trisphosphate metabolic process	SoyBase	N/A	ISS
GO:0046855	GO-bp	Annotation by Michelle Graham. GO Biological Process: inositol phosphate dephosphorylation	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0004439	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	SoyBase	N/A	ISS
GO:0042578	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoric ester hydrolase activity	SoyBase	N/A	ISS
KOG1889	KOG	Putative phosphoinositide phosphatase	JGI		ISS
PTHR11200	Panther	INOSITOL 5-PHOSPHATASE	JGI		ISS
PF02383	PFAM	SacI homology domain	JGI		ISS
UniRef100_G7K028	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylinositide phosphatase SAC1 n=1 Tax=Medicago truncatula RepID=G7K028_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C3AB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C3AB related cluster n=1 Tax=unknown RepID=UPI000233C3AB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g14320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g14320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g121500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g14320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g14320

Limit To All Plant Sequences

>Glyma04g14320.2   sequence type=CDS   gene model=Glyma04g14320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTGCAGTGCACAACGATTGAATGACCTGGGTGATGAGTCTAGATTGCTTCCTCTTTGGAGACAGGCAGAGCCTCGATTCCTATGGAACAATTATATGTTAGAAGTGCTTATAGATAACAAGGTAGGCTTTCATCACTTTCAAGCAGTCATTGGGAAAGATATTATTGATGTCAATTTGACTGCCAGGAGATGCACAGGAAGAAATGGAACTCGGATGTGGAGAAGAGGAGTTGATCCTGATGGCTATGTTGCCAATTTTGTGGAAATAGAACAAATTATGCAGTTTAATGGGTATACTGCTTCATTTGTTCAGGTCCGTGGTTCTATCCCACTCCTCTGGCAGCAAATTGTTGACTTAACTTATAAACCAAAGTTTGAGTTATTGAAACTTGAGGAAGCTCCACGAGTCCTAGAGAGGCATTTCTTAGATTTAAGGAAAAAATATGGGGCAGTATTGGCTGTTGATGTTGTTAACGAGCATGGCGGAGAAGGGCGACTGTGTGAAAAATTTGGTGATGCATCGCAGCATGTGGCTGGTAATGATATATCTGCACTTGGATTTCACCATGTCTGTGGGCATGTTCATTTTGATCGTCTCTCAATCCTGTATGATCAAATTCAAGATATCCTTGAGAGAAATGGATATCTTCTATTGAATGGAAAAGGAGAGAAAATGAAGGAGCAAGTTAGAGTTGTTAGGACCAATTGTATAGATTGTTTAGACCGTACAAATGTAACTCAGAGCATGATAGGCCGAAATATGTTGGAATATCAGCTTAGAAGGCTTGGTGTCTTTGGTGCTGAAGAAACCATTAGTTCACATCCAAATCTGGATGAAAACTTTAAGATCTTGTGGGCTAATCATGGGGATGATATAAGTATTCAATACTCAGGAACTCCTGCTCTTAAAGGAGACTTTGTCAGATTTGGGCACCGCACAATTCAAGGGATACTACAAGATGGTGTCAATGCTCTTCTACGATATTATTTCAATAATTTTGATGCAATTGATCTCTTGCAAGGACATTATATAGTTTCTGTTGGCCGAGATACAGCCGCCACTTCTCAGAAAGGATGCCTTGAAGCTTCATTTCCTCTGGCGTTGGGTCTGGTTTTGATTGGTTTCCTTTTTGCAGCCATGTCACTGAGGCAAGTTCAATATGATTTTCGGCACATCTTCTTTTCGCTAATGTGGGCGGGCATTAGCATCGGCATAGCAGCATTTGTGAGGGCTAATGGTCGTGTTTTCTGCAACAGGCCTCGCCTACACAACCCCCGGTGA

Predicted protein sequences of Glyma04g14320

Limit To All Plant Sequences

>Glyma04g14320.2   sequence type=predicted peptide   gene model=Glyma04g14320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFCSAQRLNDLGDESRLLPLWRQAEPRFLWNNYMLEVLIDNKVGFHHFQAVIGKDIIDVNLTARRCTGRNGTRMWRRGVDPDGYVANFVEIEQIMQFNGYTASFVQVRGSIPLLWQQIVDLTYKPKFELLKLEEAPRVLERHFLDLRKKYGAVLAVDVVNEHGGEGRLCEKFGDASQHVAGNDISALGFHHVCGHVHFDRLSILYDQIQDILERNGYLLLNGKGEKMKEQVRVVRTNCIDCLDRTNVTQSMIGRNMLEYQLRRLGVFGAEETISSHPNLDENFKILWANHGDDISIQYSGTPALKGDFVRFGHRTIQGILQDGVNALLRYYFNNFDAIDLLQGHYIVSVGRDTAATSQKGCLEASFPLALGLVLIGFLFAAMSLRQVQYDFRHIFFSLMWAGISIGIAAFVRANGRVFCNRPRLHNPR*

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