Glyma04g13920 - SoyBase

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Report for Sequence Feature Glyma04g13920

Feature Type:	gene_model
Chromosome:	Gm04
Start:	13716704
stop:	13720611
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g13920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04570	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr1:1246859-1248600 REVERSE LENGTH=542	SoyBase	E_val: 8.00E-163	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
PTHR24003	Panther	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PR	JGI		ISS
PTHR24003:SF251	Panther		JGI		ISS
PF03092	PFAM	BT1 family	JGI		ISS
UniRef100_B9RWT8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transporter, putative n=1 Tax=Ricinus communis RepID=B9RWT8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JVS3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JVS3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g13920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g13920

Paralog	Evidence	Comments
Glyma06g47610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g13920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g119900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g13920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g13920

Limit To All Plant Sequences

>Glyma04g13920.2   sequence type=CDS   gene model=Glyma04g13920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTTACGCTATTTCTTCTCAGAACCCATTGGTGCGGAGCATGCCAAGAATCCATAAACATCGCAAAAAACCATCTCTGCCACCGAATTTAAGACCTATAACTTGTTTCCAAAACTATAGTAACCCCAACAGCAACAGTGCCGTCAATAACAGACCCACATTCACAGCGAACACGGTGACGAGGCACGTTTTCGTTAAGGAGAAGTACGAGGAGAAAGAGAGGGAATTTGTTGGTTACTGCAACAGCAGCAACAGACAAATGATGTTGTTGTGTGGGTTAGGCTATTGGGTGCAAGGCTTCAGGTGTTTTCCGTGGCTGGCACTGAACTTTCACATGGCCGGCAACCTCAACTTGCACCCGTCCACGTTGCAGCTCGTGCAGAACTTCGCTAATATACCAATGGTGGCTAAGCCACTCTATGGAATACTTTCGGATGCTATCTATATTAAGGGTGCTCACAGAATACCTTATGTTGTCATAGGAGGTCTTCTGCAAGTATTTTCTTGGAGTCTTCTGGCATTGGTCCCCGTTGCACACAAAGTGCTTCCCAACTTAATTGCATCTGTGCTTCTCAGCAATTTCGGCGCATCCATTACAGAAGTAGCACAAGATGCTCTTGTAGCAGAGTATGGCAAGAAGCACAAAATTGGTGGTCTTCAGTCATATGCATTCATGGCATTAGCTGCAGGTGGAATCTTAGGCAACTTGATTGGTGGTTATTTCTTACTGAAATTGCCTCCCAGAATCATTTTTTTCATATTTTCATCCTTACTGTCTCTACAACTAGCAATTTCTTTCTCAACAAGGGAGGAGTCTTTAGGCATAGCACAACTTTCAGCTCAAAATCTTGCTAAGAGATCCATCTCAGAAAATATCAAAAACCAAGTCTCTGATCTTGTCATGGCTATCAGCGACAAGAGCATTTCTAAGCCCCTTGTATGGATTGTTGGATCAATTGCCATGGTTCCAATGCTTTCAGGCTCTATATTTTGCTATCAGACACAGCGTCTATATCTTGATCCTACAGTAATTGGGTGTTCTCGAGTAATTGGCCAGTTTGCGCTTCTTTCAGGAACCGTGCTTTATAACCATTATTGGAAAAAAATTCCACCGAGAAGGCTGATAGGCATGGTGCAGGTTCTATATGCTTCATCTCTACTTCTTGATCTCGTTTTGGTTAACCAGATAAATCTCAAATGGGGAATTCAGAATGATGTGTTTGCTCTTTGCTTTTCTGGTTTAGCAGAAGTTGTGGCTCAGTTTAAGCTCCTTCCTTTCTCAGTTTTATTTGCAAATTTATGTCCAAAGGGCTGTGAAGGATCTCTCGCCGCATTCCTTGCATCAGCTTTGTGTGTATCATCAATAGCCAGTGCCTTTCTGGGTGTTGGATTGGCATCTTGCCTTGGCATTACATCCGGTGATTACTCGGGCTTGACGAGGGGAATTCTTGTGCAGTTCATTGCAGCTTTAGTACCATTAAGATGGATTCATTCTTTACCAATGACACAACTGGTTGAGAAGCGAAGGAGAAGAAGTATGAGCAGAAAAGCACGCAGAAACAGAAGAGTTGGAAAAGTTGTGCTTGGTTATGTTAACGTCTACAGGCCTGAGAGAGAATGA

Predicted protein sequences of Glyma04g13920

Limit To All Plant Sequences

>Glyma04g13920.2   sequence type=predicted peptide   gene model=Glyma04g13920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIYAISSQNPLVRSMPRIHKHRKKPSLPPNLRPITCFQNYSNPNSNSAVNNRPTFTANTVTRHVFVKEKYEEKEREFVGYCNSSNRQMMLLCGLGYWVQGFRCFPWLALNFHMAGNLNLHPSTLQLVQNFANIPMVAKPLYGILSDAIYIKGAHRIPYVVIGGLLQVFSWSLLALVPVAHKVLPNLIASVLLSNFGASITEVAQDALVAEYGKKHKIGGLQSYAFMALAAGGILGNLIGGYFLLKLPPRIIFFIFSSLLSLQLAISFSTREESLGIAQLSAQNLAKRSISENIKNQVSDLVMAISDKSISKPLVWIVGSIAMVPMLSGSIFCYQTQRLYLDPTVIGCSRVIGQFALLSGTVLYNHYWKKIPPRRLIGMVQVLYASSLLLDLVLVNQINLKWGIQNDVFALCFSGLAEVVAQFKLLPFSVLFANLCPKGCEGSLAAFLASALCVSSIASAFLGVGLASCLGITSGDYSGLTRGILVQFIAALVPLRWIHSLPMTQLVEKRRRRSMSRKARRNRRVGKVVLGYVNVYRPERE*

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