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Report for Sequence Feature Glyma04g13670

Feature Type:gene_model
Chromosome:Gm04
Start:13421854
stop:13426769
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g13670
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G25240AT Annotation by Michelle Graham. TAIR10: SKU5 similar 1 | chr4:12930539-12933563 FORWARD LENGTH=589 SoyBaseE_val: 0ISS
GO:0009165GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0031225GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane SoyBaseN/AISS
GO:0046658GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
KOG1263 KOG Multicopper oxidases JGI ISS
PTHR11709Panther MULTI-COPPER OXIDASE JGI ISS
PTHR11709:SF18Panther SUBFAMILY NOT NAMED JGI ISS
PF00394PFAM Multicopper oxidase JGI ISS
PF07731PFAM Multicopper oxidase JGI ISS
PF07732PFAM Multicopper oxidase JGI ISS
UniRef100_G7IYH4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Monocopper oxidase-like protein SKS1 n=1 Tax=Medicago truncatula RepID=G7IYH4_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JVS1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JVS1_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g13670
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g13670
ParalogEvidenceComments
Glyma06g47670 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g13670 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g119600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g13670
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g13670
>Glyma04g13670.1   sequence type=CDS   gene model=Glyma04g13670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATGGTTCTGTCTGGGTTCTCTGTGCTGCTGCACATTGTTCTGCTCTCAAGACTTTGTTTTGCTGGCGACCCAACTGTTTTCACTGAACTTCGTGTATCCTACACCACTGTTTCACCTCTGGGTGTTCCTCAACAGGTCATAGCTATCAACAAGAAGTTTCCAGGACCTGTCATCAATGTTACAACCAATAACCATGTAATTGTGAATGTGTACAATGAATTGGATGAAGGCCTTCTCCTTTCATGGTCGGGGGTTCAAATGCGGCGTAACTCGTGGCAAGATGGAGTCCTTGGCACAAATTGTCCAATTCCTCCCAATTGGAATTGGACATATCAGTTCCAAGTCAAGGATCAAATTGGAAGTTTCTTTTACTTCCCTTCTCTTGGTTTCCAAAGAGCCTCTGGTGGCTTTGGTCCCTTTGTTATCAATAATAGGGAAATTATTCAAATTCCTTTTGCACGGCCGGATGGAGAGATTTTCATTATGATTGGTGATTGGTATACTCAGAACCACACGGCCCTTAGAGCAACACTTGATGGTGGAAAAAATCTTGGGATACCAGATGGTGTTCTCATCAATGGGAAAGGGCCTTTCCAGTACAACACTACTCTTGTTCCTGGTGGCATCAATTATGAAACGATTACTGTTGATCCAGGCAAGACTTATCGAATTCGTGTCCACAATGTGGGGATCTCAACTTCTTTGAATTTCCGAATTCAAAATCATAATCTATTGTTGGTGGAGACTGAGGGGCATTACACAACTCAAACAAATTTCACCAGTTTTGATATTCATGCTGGCCAGTCATACTCTTTTCTGCTTTCCACTGACCAGAATGCAAGTACAGACTACTATATTGTTGCGAGTGCCAGGTTCGTGAATGAATCATTGTGGGAGAAGGTTACAGGTGTTGCAATTTTACACTATTCAAATTCCAAGGGGCCAGCAACTGGTCCTCTGCCTCCCCCACCTAGTGATTTTTATGACAAGACAGCTTCAATGAACCAAGCAAGAAGTGTCAGGCAAAATACATCTGCTAGTGGTGCTCGTCCTAATCCTCAAGGGTCCTTTCATTATGGCTCCATCAATATAACTGATACTTATGTGTTTAAGGTTACATCCCTGGTGCCAATCAATGGTACAAATCGAGCTACTATTAATGGGATCTCATTTCTCAAGCCTGAGGTTCCATTCCGGCTTGCTGACAAGCATCAATTAAGAGGAACATATAAGCTTGATTTTCCCAGCAAGCCAATGAACAGAACCCCAGTAATTGACAGATCAATGATCAATGCTACATATAAGGGATTCATTGAGATTATATTGCAGAACAATGACTCCTCTATTCAAAACTTTCATCTGGATGGCTACTCCTTTTTTGTAGTTGGGATGGATTATGGTGATTGGTCAGAAAATTCTAGAGGTTCTTATAACAAGTGGGATGCAATATCTCGCTGCACAACTCAGGTTTTTCCTGGAGGATGGACAGCTATCCTTATATCGCTTGACAATGTTGGATCATGGAATATGAGAGCAGAAAACCTGGACAGGTGGTACCTAGGTCAAGAAACTTATTTGAAGATCGTCAATCCGGAAGAGAATGGTGACACCGAGATGGCTGCACCAGATAATGTTCTATATTGTGGTCCCCTCAAGAGCTTGCAGAAGACGCATTCTACTTTTTCTGCAGCTTCTACTTTGGGACATAGCTTGGACCTTTTCACAGTGCTCCTGGGACTTTTTGCTATGATTTTTCTCTTCCTAGCTAGATAA
Predicted protein sequences of Glyma04g13670
>Glyma04g13670.1   sequence type=predicted peptide   gene model=Glyma04g13670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMVLSGFSVLLHIVLLSRLCFAGDPTVFTELRVSYTTVSPLGVPQQVIAINKKFPGPVINVTTNNHVIVNVYNELDEGLLLSWSGVQMRRNSWQDGVLGTNCPIPPNWNWTYQFQVKDQIGSFFYFPSLGFQRASGGFGPFVINNREIIQIPFARPDGEIFIMIGDWYTQNHTALRATLDGGKNLGIPDGVLINGKGPFQYNTTLVPGGINYETITVDPGKTYRIRVHNVGISTSLNFRIQNHNLLLVETEGHYTTQTNFTSFDIHAGQSYSFLLSTDQNASTDYYIVASARFVNESLWEKVTGVAILHYSNSKGPATGPLPPPPSDFYDKTASMNQARSVRQNTSASGARPNPQGSFHYGSINITDTYVFKVTSLVPINGTNRATINGISFLKPEVPFRLADKHQLRGTYKLDFPSKPMNRTPVIDRSMINATYKGFIEIILQNNDSSIQNFHLDGYSFFVVGMDYGDWSENSRGSYNKWDAISRCTTQVFPGGWTAILISLDNVGSWNMRAENLDRWYLGQETYLKIVNPEENGDTEMAAPDNVLYCGPLKSLQKTHSTFSAASTLGHSLDLFTVLLGLFAMIFLFLAR*






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