Glyma04g13660 - SoyBase

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Report for Sequence Feature Glyma04g13660

Feature Type:	gene_model
Chromosome:	Gm04
Start:	13374827
stop:	13380689
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g13660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G12260	AT	Annotation by Michelle Graham. TAIR10: NAC 007 \| chr1:4163058-4164486 REVERSE LENGTH=395	SoyBase	E_val: 3.00E-132	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0042546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_F1T111	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Populus trichocarpa RepID=F1T111_POPTR	SoyBase	E_val: 1.00E-171	ISS
UniRef100_UPI000233A53F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A53F related cluster n=1 Tax=unknown RepID=UPI000233A53F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g13660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g13660

Paralog	Evidence	Comments
Glyma06g47680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g13660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g119500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g13660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g13660

Limit To All Plant Sequences

>Glyma04g13660.2   sequence type=transcript   gene model=Glyma04g13660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCCTTACTTCCTCTTCCTTCACCGTTTGCACATTTCCTCTCTCACATATTCACAATTAGTGAAGCTTGTAGCAGATAGATAAATAGATGGAAGAAAGAGACCCTTGTGAGAAAGTTTAATTTTCTTTGTTGCATTCTTCACTCTTTGTTAATTCGTTGTGTCTCTATCGGTTGCCGATAGAGGTGGCACTATAGAGAGACTCGTTTCATTTCCTTTCCTTTCCTTTTATTTCTTCTCATTAGTTTGCCATTTTTCCGCTCAGACAAAAGCTTCCCCACCAATTCAGCTCACCCTGACAGTGAGATCTATCTGATCTCATCACATTTCTATTCTTTGCGAGAAAACAAAGAGATCGACCGAATCATCATCGAAGAGAAGAACTATATATCATTCACCATTTGCTTTTTCTCTCCTTATTTAACCCTACTTCCCTTTTTTCACCCTTTTCTACGTCCACTCTTCTTCTTCCTCGCATCTCTTTTGCCTCTTTCTTTCTCAAACCCTTTTTCTTATTCCTCGGGATCCAGTTCAAGAACCACGTGTCTCGTTGCTTCTGTTCTATGTTTATAAGTAACTTGAGTTCCTTCTTTCTCTTCTCTTTTTGCATTGAAATATTGTGTCTGATTTGGTTAAGTTGGGAGATATATATACTGTTTAGTTAACTTGCATCATATCTCAGTGTCAAAGACCAGTTCATCATTTTTCTGAGACATTAAGGGATTTTAATTTGCATCTTTGGGGGAAGATTTGTGACTGAACCATCTTGATCTGTGACTATTCCAAGAGAGAAAGGGCTCCATAGAGAGAGGGAGAATATGAATAATTTTTCTCATGTTCCCCCCGGTTTTAGGTTCCACCCTACTGATGAAGAACTTGTTGATTACTACCTAAGGAAGAAAATTACCTCAAGAAGGATTGACCTCGATGTCATAAAAGATGTGGACCTCTATAAAATTGAGCCATGGGACCTTCAAGAGCTTTGCAGAATAGGAGCAGAAGAGAAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACAGCAGCAGGGTTTTGGAAAGCAACAGGAAGAGACAAAGCAATCTATTCGAAGCATGACTTGATAGGGATGAGGAAAACCTTAGTCTTTTATAAAGGTCGGGCCCCAAATGGACAAAAATCAGATTGGATCATGCACGAGTATCGACTTGAAACAGATGATAATGGCGCACCACAGGCAAAAGGATGGGTTGTGTGTAGAGTATTCAAAAAGAGACTAACAACCATGCGTAAACTGAGTGAGCATGATTCTCCCTGTTGGTATGATGACCAAGTCTCTTTCATGCAAGACTTGGACTCACCAAAGCAAAGCTCTCAACCTAATTTTCCCTACCAGCAGTTCCAATATCCTTGCAAGAAAGAGTTAGATTTTTCATACCATTTACCTCTCCAGCTTCCATTAGAGAACCAAAAATTGTTCCAATCTGCAGCCTCCAACTCAATGACACCATATGGTATAGAAGAAAACCCTAATGCCATGCAGCCAGCATCAATCATGCAACAAGTTCAACAACAAAATTTTCAAGTGTTTGGAAACAATTCCAATGATCAACAAGTGGCTGATTGGAGAGCTCTTGACAAGTATGTTGCTTCACAACTTAGTCAAGAAGATGCATCCAAAGATCACAATAGTTATTCAAACGCAGACAACATTTTTCAAGTGAAGAACAATAGCACTATTGAACAGTTGAGGGACTTGGACAAGGAAGAAAAGATGGCTGAAAATGCCTCAACATCAACCTCAAGCTGTCCAATTGACATGTGGAAATAGTGGCTGTTTAAATTGATTTTGGGTTTATACTAATAATAAGGGTACTTTAATTAGTTAATATTAAAAAAAATGAAAATACCGTATAATTTCTTGTACATAATAAATGAAATGAACATGACATTAGAGCTAGTGCATGTGAATTCTCGGGATTCACTTCTAGCCAGCATTAAGTTAAATTTATTGAAATAGAACAATAGCCAGTAGAATGTGATCATATTTCTCATAAGTGATATAGCTTGCAGGATTTTTAGTTATTGTGTGGTTTAAAAGTAATGGGCTCTAGCCACTCCAGCTGCTCTATGTTTGTATTTTACATTCAAATGAA

Coding sequences of Glyma04g13660

Limit To All Plant Sequences

>Glyma04g13660.1   sequence type=CDS   gene model=Glyma04g13660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAATTTTTCTCATGTTCCCCCCGGTTTTAGGTTCCACCCTACTGATGAAGAACTTGTTGATTACTACCTAAGGAAGAAAATTACCTCAAGAAGGATTGACCTCGATGTCATAAAAGATGTGGACCTCTATAAAATTGAGCCATGGGACCTTCAAGAGCTTTGCAGAATAGGAGCAGAAGAGAAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACAGCAGCAGGGTTTTGGAAAGCAACAGGAAGAGACAAAGCAATCTATTCGAAGCATGACTTGATAGGGATGAGGAAAACCTTAGTCTTTTATAAAGGTCGGGCCCCAAATGGACAAAAATCAGATTGGATCATGCACGAGTATCGACTTGAAACAGATGATAATGGCGCACCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAAAAGAGACTAACAACCATGCGTAAACTGAGTGAGCATGATTCTCCCTGTTGGTATGATGACCAAGTCTCTTTCATGCAAGACTTGGACTCACCAAAGCAAAGCTCTCAACCTAATTTTCCCTACCAGCAGTTCCAATATCCTTGCAAGAAAGAGTTAGATTTTTCATACCATTTACCTCTCCAGCTTCCATTAGAGAACCAAAAATTGTTCCAATCTGCAGCCTCCAACTCAATGACACCATATGGTATAGAAGAAAACCCTAATGCCATGCAGCCAGCATCAATCATGCAACAAGTTCAACAACAAAATTTTCAAGTGTTTGGAAACAATTCCAATGATCAACAAGTGGCTGATTGGAGAGCTCTTGACAAGTATGTTGCTTCACAACTTAGTCAAGAAGATGCATCCAAAGATCACAATAGTTATTCAAACGCAGACAACATTTTTCAAGTGAAGAACAATAGCACTATTGAACAGTTGAGGGACTTGGACAAGGAAGAAAAGATGGCTGAAAATGCCTCAACATCAACCTCAAGCTGTCCAATTGACATGTGGAAATAG

>Glyma04g13660.2   sequence type=CDS   gene model=Glyma04g13660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAATTTTTCTCATGTTCCCCCCGGTTTTAGGTTCCACCCTACTGATGAAGAACTTGTTGATTACTACCTAAGGAAGAAAATTACCTCAAGAAGGATTGACCTCGATGTCATAAAAGATGTGGACCTCTATAAAATTGAGCCATGGGACCTTCAAGAGCTTTGCAGAATAGGAGCAGAAGAGAAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACAGCAGCAGGGTTTTGGAAAGCAACAGGAAGAGACAAAGCAATCTATTCGAAGCATGACTTGATAGGGATGAGGAAAACCTTAGTCTTTTATAAAGGTCGGGCCCCAAATGGACAAAAATCAGATTGGATCATGCACGAGTATCGACTTGAAACAGATGATAATGGCGCACCACAGGCAAAAGGATGGGTTGTGTGTAGAGTATTCAAAAAGAGACTAACAACCATGCGTAAACTGAGTGAGCATGATTCTCCCTGTTGGTATGATGACCAAGTCTCTTTCATGCAAGACTTGGACTCACCAAAGCAAAGCTCTCAACCTAATTTTCCCTACCAGCAGTTCCAATATCCTTGCAAGAAAGAGTTAGATTTTTCATACCATTTACCTCTCCAGCTTCCATTAGAGAACCAAAAATTGTTCCAATCTGCAGCCTCCAACTCAATGACACCATATGGTATAGAAGAAAACCCTAATGCCATGCAGCCAGCATCAATCATGCAACAAGTTCAACAACAAAATTTTCAAGTGTTTGGAAACAATTCCAATGATCAACAAGTGGCTGATTGGAGAGCTCTTGACAAGTATGTTGCTTCACAACTTAGTCAAGAAGATGCATCCAAAGATCACAATAGTTATTCAAACGCAGACAACATTTTTCAAGTGAAGAACAATAGCACTATTGAACAGTTGAGGGACTTGGACAAGGAAGAAAAGATGGCTGAAAATGCCTCAACATCAACCTCAAGCTGTCCAATTGACATGTGGAAATAG

Predicted protein sequences of Glyma04g13660

Limit To All Plant Sequences

>Glyma04g13660.1   sequence type=predicted peptide   gene model=Glyma04g13660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNFSHVPPGFRFHPTDEELVDYYLRKKITSRRIDLDVIKDVDLYKIEPWDLQELCRIGAEEKNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDDNGAPQEEGWVVCRVFKKRLTTMRKLSEHDSPCWYDDQVSFMQDLDSPKQSSQPNFPYQQFQYPCKKELDFSYHLPLQLPLENQKLFQSAASNSMTPYGIEENPNAMQPASIMQQVQQQNFQVFGNNSNDQQVADWRALDKYVASQLSQEDASKDHNSYSNADNIFQVKNNSTIEQLRDLDKEEKMAENASTSTSSCPIDMWK*

>Glyma04g13660.2   sequence type=predicted peptide   gene model=Glyma04g13660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNFSHVPPGFRFHPTDEELVDYYLRKKITSRRIDLDVIKDVDLYKIEPWDLQELCRIGAEEKNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDDNGAPQAKGWVVCRVFKKRLTTMRKLSEHDSPCWYDDQVSFMQDLDSPKQSSQPNFPYQQFQYPCKKELDFSYHLPLQLPLENQKLFQSAASNSMTPYGIEENPNAMQPASIMQQVQQQNFQVFGNNSNDQQVADWRALDKYVASQLSQEDASKDHNSYSNADNIFQVKNNSTIEQLRDLDKEEKMAENASTSTSSCPIDMWK*

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