Glyma04g13640 - SoyBase

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Report for Sequence Feature Glyma04g13640

Feature Type:	gene_model
Chromosome:	Gm04
Start:	13340149
stop:	13342226
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g13640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G49630	AT	Annotation by Michelle Graham. TAIR10: presequence protease 2 \| chr1:18368405-18375336 REVERSE LENGTH=1080	SoyBase	E_val: 1.00E-12	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0016485	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein processing	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004222	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity	SoyBase	N/A	ISS
GO:0008237	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
UniRef100_B9RY20	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc metalloprotease, putative n=1 Tax=Ricinus communis RepID=B9RY20_RICCO	SoyBase	E_val: 3.00E-12	ISS
UniRef100_G7KWV5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Medicago truncatula RepID=G7KWV5_MEDTR	SoyBase	E_val: 1.00E-20	ISS

Expression Patterns of Glyma04g13640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g13640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g119400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g13640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g13640

Limit To All Plant Sequences

>Glyma04g13640.1   sequence type=CDS   gene model=Glyma04g13640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCCTGGATGAATTCTCAATAGATTTGCAAGTGTTTGCCCAAGAGTTGTTGAGAGAGCATTTGGTAATGAAATTGAGACCTCATCTGCATGTCTGTCAATTCACCATGCCATATCCACATGGACAAAAATATTTTCCGCATGATCCTGAAAAAGTTGCTTGTGATGAAGTCGCAGAGTTGCCCCATGCTACTCATGGGCTTCGACTTAAGCAGGAAACTCCTGACCCACCAAAAGCTTTGAAAATTGTTCCTAGCCTTTCTCTACAAAAAATTCCTAAAGAACCTATTCGTGTTCCCACTGAGGATTTACTTTCTAAATCCTCTGGAAGATGTTTTACATTTTGTTTCCATTCATCTCTAGTTCCTAATATTAGGGAAGCTTGGGTGGAAAAGGTTGTGGAGACACCATATATGACACCTACTACTTCTCCACTTTTCTTTACTCCTCAATTCACTACTCCTATCAGTCCCTATAACCAGTGTGGATTCAATCCTCTATTTGAAACATCAACTGATGCTGAGTTCAACAGATTAAAGTCCTCACCTCCTCCAAACATTCAAGATGAAAGTAAGGGAAATGGAGATGAGGTTGATGGTTGTTTCATCACAATAAATACAAATTTTAAATATGATTATATGGACAAGCAACATATGCTTGAGACTTATCAAGCATGGCAAGCAACATATATCAATCTAGTAGGACATGTATGTTCTCCTAGAATTTTTTTTACTGCCCTATCCCCTAGAAGGTCAGCTTTGGCCTAA

Predicted protein sequences of Glyma04g13640

Limit To All Plant Sequences

>Glyma04g13640.1   sequence type=predicted peptide   gene model=Glyma04g13640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FLDEFSIDLQVFAQELLREHLVMKLRPHLHVCQFTMPYPHGQKYFPHDPEKVACDEVAELPHATHGLRLKQETPDPPKALKIVPSLSLQKIPKEPIRVPTEDLLSKSSGRCFTFCFHSSLVPNIREAWVEKVVETPYMTPTTSPLFFTPQFTTPISPYNQCGFNPLFETSTDAEFNRLKSSPPPNIQDESKGNGDEVDGCFITINTNFKYDYMDKQHMLETYQAWQATYINLVGHVCSPRIFFTALSPRRSALA*

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