SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G49630 | AT | Annotation by Michelle Graham. TAIR10: presequence protease 2 | chr1:18368405-18375336 REVERSE LENGTH=1080 | SoyBase | E_val: 1.00E-12 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0016485 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein processing | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004222 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity | SoyBase | N/A | ISS |
| GO:0008237 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| UniRef100_B9RY20 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc metalloprotease, putative n=1 Tax=Ricinus communis RepID=B9RY20_RICCO | SoyBase | E_val: 3.00E-12 | ISS |
| UniRef100_G7KWV5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Medicago truncatula RepID=G7KWV5_MEDTR | SoyBase | E_val: 1.00E-20 | ISS |
|
Glyma04g13640 not represented in the dataset |
Glyma04g13640 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g119400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g13640.1 sequence type=CDS gene model=Glyma04g13640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCCTGGATGAATTCTCAATAGATTTGCAAGTGTTTGCCCAAGAGTTGTTGAGAGAGCATTTGGTAATGAAATTGAGACCTCATCTGCATGTCTGTCAATTCACCATGCCATATCCACATGGACAAAAATATTTTCCGCATGATCCTGAAAAAGTTGCTTGTGATGAAGTCGCAGAGTTGCCCCATGCTACTCATGGGCTTCGACTTAAGCAGGAAACTCCTGACCCACCAAAAGCTTTGAAAATTGTTCCTAGCCTTTCTCTACAAAAAATTCCTAAAGAACCTATTCGTGTTCCCACTGAGGATTTACTTTCTAAATCCTCTGGAAGATGTTTTACATTTTGTTTCCATTCATCTCTAGTTCCTAATATTAGGGAAGCTTGGGTGGAAAAGGTTGTGGAGACACCATATATGACACCTACTACTTCTCCACTTTTCTTTACTCCTCAATTCACTACTCCTATCAGTCCCTATAACCAGTGTGGATTCAATCCTCTATTTGAAACATCAACTGATGCTGAGTTCAACAGATTAAAGTCCTCACCTCCTCCAAACATTCAAGATGAAAGTAAGGGAAATGGAGATGAGGTTGATGGTTGTTTCATCACAATAAATACAAATTTTAAATATGATTATATGGACAAGCAACATATGCTTGAGACTTATCAAGCATGGCAAGCAACATATATCAATCTAGTAGGACATGTATGTTCTCCTAGAATTTTTTTTACTGCCCTATCCCCTAGAAGGTCAGCTTTGGCCTAA
>Glyma04g13640.1 sequence type=predicted peptide gene model=Glyma04g13640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high FLDEFSIDLQVFAQELLREHLVMKLRPHLHVCQFTMPYPHGQKYFPHDPEKVACDEVAELPHATHGLRLKQETPDPPKALKIVPSLSLQKIPKEPIRVPTEDLLSKSSGRCFTFCFHSSLVPNIREAWVEKVVETPYMTPTTSPLFFTPQFTTPISPYNQCGFNPLFETSTDAEFNRLKSSPPPNIQDESKGNGDEVDGCFITINTNFKYDYMDKQHMLETYQAWQATYINLVGHVCSPRIFFTALSPRRSALA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
