Glyma04g13590 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g13590

Feature Type:	gene_model
Chromosome:	Gm04
Start:	13195168
stop:	13196273
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g13590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G51520	AT	Annotation by Michelle Graham. TAIR10: Plant invertase/pectin methylesterase inhibitor superfamily protein \| chr5:20925980-20926594 FORWARD LENGTH=204	SoyBase	E_val: 1.00E-42	ISS
GO:0004857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: enzyme inhibitor activity	SoyBase	N/A	ISS
GO:0030599	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity	SoyBase	N/A	ISS
GO:0046910	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectinesterase inhibitor activity	SoyBase	N/A	ISS
PTHR22931	Panther	PHOSPHOENOLPYRUVATE DIKINASE-RELATED	JGI		ISS
PTHR22931:SF14	Panther	INVERTASE/PECTIN METHYLESTERASE INHIBITOR FAMILY P	JGI		ISS
PF04043	PFAM	Plant invertase/pectin methylesterase inhibitor	JGI		ISS
UniRef100_C6T4C5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T4C5_SOYBN	SoyBase	E_val: 9.00E-163	ISS
UniRef100_G7IYI6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 21 kDa protein n=1 Tax=Medicago truncatula RepID=G7IYI6_MEDTR	SoyBase	E_val: 8.00E-94	ISS

Expression Patterns of Glyma04g13590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g13590

Paralog	Evidence	Comments
Glyma06g47730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g13590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g118900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g13590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g13590

Limit To All Plant Sequences

>Glyma04g13590.1   sequence type=CDS   gene model=Glyma04g13590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCCAACACTTTGAAGCTAGCTTCCTACAAAGTTTTCACAATTGTTGCATTCATCCTTCTAGCCAAATTTAACATCATTTCAGCTTGTGAGAATTCTCCAATCCCCACCAATTCCACCCTAACCAAGATTGATTACACTGCCACCAATTATGGAAACACAACCATTCCATCCGAATCCAATTACACTCAAACCTTCAAAAGCTACATTAAAGCCTCTTGCAATTCAACCACGTATCCATCAATATGCTACAAAACACTATTCCCCTATGCTACAAAAATTGAAGCAGATCCTCTCAAGCTATGCAATGTGTCACTCTCCCTTGCCTTAAAGGCAGCCAAGAGTGCATCCTCCACCATATCAAAGATTCTAAAGAAAAACAATTTGACAAAAATTGCAGAACAAGTGGTGCAAGATTGCTTTGGGAATGTGAAGGATTCCATTGGTGAACTCAAAGATTCCCTTGATGCCATGGGACATTTGGATGGTGTTGATAGAAAGTTTCAGATCAGCAACATAAAGACATGGGTGAGTGCTTCTATCACCAATGACCAAACGTGCTCAGATGGGTTTGATGAGATGAACGTGGATTCCACTTTGACGGACAAGATCAGAAAAATTGTCTTGGATGTGGCAAGGAAGACTAGCAATGCTTTGTATTTCATCAACAACAATGTATACTAA

Predicted protein sequences of Glyma04g13590

Limit To All Plant Sequences

>Glyma04g13590.1   sequence type=predicted peptide   gene model=Glyma04g13590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEANTLKLASYKVFTIVAFILLAKFNIISACENSPIPTNSTLTKIDYTATNYGNTTIPSESNYTQTFKSYIKASCNSTTYPSICYKTLFPYATKIEADPLKLCNVSLSLALKAAKSASSTISKILKKNNLTKIAEQVVQDCFGNVKDSIGELKDSLDAMGHLDGVDRKFQISNIKTWVSASITNDQTCSDGFDEMNVDSTLTDKIRKIVLDVARKTSNALYFINNNVY*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain