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Report for Sequence Feature Glyma04g13220

Feature Type:gene_model
Chromosome:Gm04
Start:12839338
stop:12840832
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g13220
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G61820AT Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:24834505-24836223 REVERSE LENGTH=475 SoyBaseE_val: 3.00E-109ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009610GO-bp Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0046482GO-bp Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF07712PFAM Stress up-regulated Nod 19 JGI ISS
UniRef100_G7LG32UniRef Annotation by Michelle Graham. Most informative UniRef hit: MtN19-like protein n=1 Tax=Medicago truncatula RepID=G7LG32_MEDTR SoyBaseE_val: 1.00E-169ISS
UniRef100_UPI000233A3C9UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A3C9 related cluster n=1 Tax=unknown RepID=UPI000233A3C9 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g13220
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g13220 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma04g13220
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g13220
>Glyma04g13220.1   sequence type=CDS   gene model=Glyma04g13220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTTATCTCTAATGCAATGATACTTTCATTCTCAATACTATTGTTGCTACCAAGTACATCATATTCACTATATCAAAAGCCTGAAAATCATATCAAGACAGCTATTTTTGTAACTGGGAGTTTTGAAATGGGACCAGGATCAATTGCAACAAAAACATTTGAGAATATAAAGTTTCCAAAAGGTCATGTTGGAATTAAGAGTTTTGATGCGGAACTAGTTGACCAAGAAGGGAACTCTATACCTTCGTATGAAACTTACCTTCATCATTGGTTTGCAATAAAGTACCACCAAAATATTACCATGTCACCTAATCCTAAGCTTCGTCGTCCTGAGGATGCTTTTTTCCAAAGAAACGAAGGCACATGTAATGGTGGCATTCTTCCACATTATTGGGGATTTGGAGTAGAATCACGAGGAACAACCTCAAAAATTCCCGATCCTTTTGCTATAGAACAAGGTAACCCAACAAAAATTAAAAATGGATATGAGGAGAAATGGTTGCTCAACATCATGGTCATTGATACACGTGGTGCACAAGATAAGAAAGCCTGCACTCAATGTAGATGTGACAATATGAATCTCCCGAAGGACTTTTATAATGTCACAAGGGATATACATAACCAAAGATTGACTACAAATTATAAAGGAGGTCTCTTTTGTTGTCAGGACAACTTACAATGCAAGCAAATAGAGGGTTTTCAAGGTTCAAGGAGAATGGTTTCCTTAAGATACAAAATTAGTTGGGTTGATTGGAACATATACCAAATACCAGTTAAGGTTTACATACTTGATTCCACCGACAAAGTGAGGTCAAATGGTTCCAAAATACTTCATGATTGTCTGGCAGAGTATACCATTCCAGCTGGTGGTGGTGGTGATTCTCCTCATGTCCAAAAAGCAAACATCCCAATGGAAAATGGAGGTTATCTAATTTATGGCACTGCTCATATGCATTCAGGTGTTGTAAATGCAACTTTATATGGACAGGATGGAAGGACTTTATGTACATCAACACCAAAATATGGAACGGGAAAAGAGGCTGGAAATGAGAAAGGTTATCTCATTGGAATGTCTGTTTGTTATCCACAACCGGGTTCAATCAAGATTCATGATGGTGAAATTTTGACTCTAGAATCTAGATATAAAAATGAGTTTCGTACTGGAGCTATGGGACATTTCTACATCTATTTGGCAGAGGAACTACCACAATGA
Predicted protein sequences of Glyma04g13220
>Glyma04g13220.1   sequence type=predicted peptide   gene model=Glyma04g13220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFISNAMILSFSILLLLPSTSYSLYQKPENHIKTAIFVTGSFEMGPGSIATKTFENIKFPKGHVGIKSFDAELVDQEGNSIPSYETYLHHWFAIKYHQNITMSPNPKLRRPEDAFFQRNEGTCNGGILPHYWGFGVESRGTTSKIPDPFAIEQGNPTKIKNGYEEKWLLNIMVIDTRGAQDKKACTQCRCDNMNLPKDFYNVTRDIHNQRLTTNYKGGLFCCQDNLQCKQIEGFQGSRRMVSLRYKISWVDWNIYQIPVKVYILDSTDKVRSNGSKILHDCLAEYTIPAGGGGDSPHVQKANIPMENGGYLIYGTAHMHSGVVNATLYGQDGRTLCTSTPKYGTGKEAGNEKGYLIGMSVCYPQPGSIKIHDGEILTLESRYKNEFRTGAMGHFYIYLAEELPQ*






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